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13_1_40cm_3_scaffold_3615

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3615_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2..280
DNA (279bp) protein (93aa)
nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta id=12556952 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleoid DNA-binding protein
13_1_40cm_3_scaffold_3615_2
unknown

Not on your lists

comp(696..929)
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_3_scaffold_3615_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

965..1306
DNA (342bp) protein (114aa)
peptidase M50 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase M50 family protein id=12556951 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M50
13_1_40cm_3_scaffold_3615_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1388..3715)
DNA (2328bp) protein (776aa)
PriA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] id=12556950 bin=CNBR_ACIDO species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
primosomal protein N'
13_1_40cm_3_scaffold_3615_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3681..4496)
DNA (816bp) protein (272aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] id=12556949 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phage SPO1 DNA polymerase-like protein
13_1_40cm_3_scaffold_3615_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(4453..5679)
DNA (1227bp) protein (409aa)
phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=RIFCS
phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] id=12556948 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
13_1_40cm_3_scaffold_3615_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5760..5948)
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_3615_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6067..6687)
DNA (621bp) protein (207aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] id=12556946 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
guanylate kinase (EC:2.7.4.8)
13_1_40cm_3_scaffold_3615_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6677..7570)
DNA (894bp) protein (298aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12556945 bin=CNBR_ACIDO species=Paenibacillus ginsengihumi genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
yicC; hypothetical protein
13_1_40cm_3_scaffold_3615_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7700..9466)
DNA (1767bp) protein (589aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] id=12556944 bin=CNBR_ACIDO species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phospholipid-lipopolysaccharide ABC transporter
13_1_40cm_3_scaffold_3615_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9648..10622)
DNA (975bp) protein (325aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-glucose-4-epimerase id=12556943 bin=CNBR_ACIDO species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-glucose 4-epimerase
13_1_40cm_3_scaffold_3615_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10639..11940)
DNA (1302bp) protein (434aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] id=12556942 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rkpK; UDP-glucose 6-dehydrogenase
13_1_40cm_3_scaffold_3615_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12346..13479
DNA (1134bp) protein (378aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556941 bin=CNBR_ACIDO species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
group 1 glycosyl transferase
13_1_40cm_3_scaffold_3615_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13463..14623
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556940 bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
AprM
13_1_40cm_3_scaffold_3615_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14620..15090
DNA (471bp) protein (157aa)
family 2 glycosyl transferase; K07011 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycosyl transferase family protein; K07011 id=12556939 bin=CNBR_ACIDO species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl transferase family protein
Displaying 15 items

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