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13_1_40cm_3_scaffold_4300

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4300_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3..2252
DNA (2250bp) protein (750aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
YD repeat-containing protein id=12557005 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
YD repeat-containing protein
13_1_40cm_3_scaffold_4300_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2316..2864)
DNA (549bp) protein (183aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_3_scaffold_4300_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3123..3818)
DNA (696bp) protein (232aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12557003 bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_3_scaffold_4300_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

3823..5184
DNA (1362bp) protein (454aa)
TPR repeat- and protein kinase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12557002 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_4300_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5443..8901)
DNA (3459bp) protein (1153aa)
Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Fis family transcriptional regulator id=12557001 bin=CNBR_ACIDO species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Fis family transcriptional regulator
13_1_40cm_3_scaffold_4300_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9021..10229
DNA (1209bp) protein (403aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=12557000 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
AroC; chorismate synthase (EC:4.2.3.5)
13_1_40cm_3_scaffold_4300_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

10379..10786
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JEY8_9ARCH
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
GxxExxY protein
13_1_40cm_3_scaffold_4300_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10842..11351
DNA (510bp) protein (170aa)
peptide deformylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
peptide deformylase id=12556999 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptide deformylase
13_1_40cm_3_scaffold_4300_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

11345..12340
DNA (996bp) protein (332aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] id=12556998 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
methionyl-tRNA formyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
methionyl-tRNA formyltransferase
13_1_40cm_3_scaffold_4300_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

12337..13698
DNA (1362bp) protein (454aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] id=12556997 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
rsmB; 16S rRNA (5-methyl-C967)-methyltransferase
13_1_40cm_3_scaffold_4300_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

13714..14436
DNA (723bp) protein (241aa)
PASTA domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12556995 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein PASTA domain-containing protein
13_1_40cm_3_scaffold_4300_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14433..15323
DNA (891bp) protein (297aa)
rpe; ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpe; ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=12556994 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
13_1_40cm_3_scaffold_4300_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

15747..16685
DNA (939bp) protein (313aa)
NAD-dependent epimerase/dehydratase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
NDP-sugar oxidoreductase id=12556992 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
NAD-dependent epimerase/dehydratase
13_1_40cm_3_scaffold_4300_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

16682..18385
DNA (1704bp) protein (568aa)
DNA uptake lipoprotein-like; K05807 putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein id=12556991 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA uptake lipoprotein-like protein
13_1_40cm_3_scaffold_4300_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18330..18983)
DNA (654bp) protein (218aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPLOWO2_12_FULL_Acidobac
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] id=12556990 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
13_1_40cm_3_scaffold_4300_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

19020..20084
DNA (1065bp) protein (355aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] id=12556989 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
nucleotidyl transferase
13_1_40cm_3_scaffold_4300_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

20081..20710
DNA (630bp) protein (210aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
phosphomannomutase; K01840 phosphomannomutase [EC:5.4.2.8] id=12556988 bin=CNBR_ACIDO species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphomannomutase (EC:5.4.2.8)
Displaying 17 items

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