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13_1_40cm_3_scaffold_5728

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5728_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(3..407)
-----------------
DNA (405bp)
protein (135aa)
wcoG; putative cell surface protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_5728_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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418..1233
-----------------
DNA (816bp)
protein (272aa)
Cbr-col-72; C. briggsae CBR-COL-72 protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=24408280 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Collagen alpha-2(I) chain
13_1_40cm_3_scaffold_5728_3
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(1230..3020)
-----------------
DNA (1791bp)
protein (597aa)
Na+/solute symporter n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN77_KORVE
Na+/solute symporter
Tax=BJP_IG2102_BRC1_58_13
13_1_40cm_3_scaffold_5728_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3017..4084)
-----------------
DNA (1068bp)
protein (356aa)
beta-lactamase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-lactamase id=12554087 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase
13_1_40cm_3_scaffold_5728_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4081..4704)
-----------------
DNA (624bp)
protein (208aa)
SSS sodium solute transporter superfamily n=1 Tax=mine drainage metagenome RepID=E6QKK1_9ZZZZ
SSS family solute/sodium (Na+) symporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SSS sodium solute transporter
13_1_40cm_3_scaffold_5728_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4698..5471)
-----------------
DNA (774bp)
protein (258aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036530B8
SSS family solute/sodium (Na+) symporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SSS family solute/sodium (Na+) symporter
13_1_40cm_3_scaffold_5728_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5657..6595
-----------------
DNA (939bp)
protein (313aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67SR6_SYMTH
Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_3_scaffold_5728_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

6595..7323
-----------------
DNA (729bp)
protein (243aa)
glucosamine-6-phosphate isomerase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
nagB; glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate isomerase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09B22_STIAD
13_1_40cm_3_scaffold_5728_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7310..8254)
-----------------
DNA (945bp)
protein (315aa)
Putative sugar phosphate isomerase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] id=12554086 bin=CNBR_ACIDO species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
N-acetylmuramic acid 6-phosphate etherase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
N-acetylmuramic acid 6-phosphate etherase
13_1_40cm_3_scaffold_5728_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8304..9194
-----------------
DNA (891bp)
protein (297aa)
recombinase; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
tyrosine recombinase XerD id=12554085 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
recombinase
13_1_40cm_3_scaffold_5728_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9363..10514
-----------------
DNA (1152bp)
protein (384aa)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase id=4128062 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
13_1_40cm_3_scaffold_5728_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10992..12218
-----------------
DNA (1227bp)
protein (409aa)
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N402_ANATU
php domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_3_scaffold_5728_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12215..14584)
-----------------
DNA (2370bp)
protein (790aa)
YjgP/YjgQ family permease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
YjgP/YjgQ family permease id=12554083 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
hypothetical protein
13_1_40cm_3_scaffold_5728_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15013..15651
-----------------
DNA (639bp)
protein (213aa)
glycoside hydrolase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
alpha-amylase/alpha-mannosidase
Displaying 14 items

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