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13_1_40cm_3_scaffold_8237

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_8237_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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3..359
DNA (357bp) protein (119aa)
LuxR family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B551A9
putative deoxyribonuclease TadD-like Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Mg-dependent DNase
13_1_40cm_3_scaffold_8237_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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383..1375
DNA (993bp) protein (331aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ispB; octaprenyl diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=12554127 bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
ispB; octaprenyl diphosphate synthase
13_1_40cm_3_scaffold_8237_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1505..2002
DNA (498bp) protein (166aa)
Appr-1-p processing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Appr-1-p processing protein id=14625670 bin=bin7_NC10_sister species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
Appr-1-p processing protein
13_1_40cm_3_scaffold_8237_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2024..2314
DNA (291bp) protein (97aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=12554126 bin=CNBR_ACIDO species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase, NAD-dependent Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_3_scaffold_8237_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2311..4206
DNA (1896bp) protein (632aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=12554126 bin=CNBR_ACIDO species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ligA; NAD-dependent DNA ligase LigA
13_1_40cm_3_scaffold_8237_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4319..5824
DNA (1506bp) protein (502aa)
protease Do; K01362 [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
S1C family peptidase (EC:3.4.21.-)
degP4; S1C family peptidase id=12554125 bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
13_1_40cm_3_scaffold_8237_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6154..7500
DNA (1347bp) protein (449aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=12554124 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
13_1_40cm_3_scaffold_8237_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(7538..8107)
DNA (570bp) protein (190aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_8237_9
unknown

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comp(8104..8643)
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_3_scaffold_8237_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8631..9173)
DNA (543bp) protein (181aa)
RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H1H6_DENA2
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_3_scaffold_8237_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9918..11060
DNA (1143bp) protein (381aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
amidohydrolase 2
hypothetical protein id=12554123 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
13_1_40cm_3_scaffold_8237_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11084..12082
DNA (999bp) protein (333aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=12554122 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
nucleoside-diphosphate-sugar epimerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
WcaG; nucleoside-diphosphate-sugar epimerases
13_1_40cm_3_scaffold_8237_13
unknown

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12402..12749
DNA (348bp) protein (116aa)

This feature has no annotations

Displaying 13 items

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