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13_2_20cm_scaffold_1233

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1233_1
unknown

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2..736
DNA (735bp) protein (245aa)

This feature has no annotations

13_2_20cm_scaffold_1233_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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997..1548
DNA (552bp) protein (184aa)
Phosphotransferase domain-containing protein n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RTP9_9PLAN
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA-binding/PHP domain-containing protein
13_2_20cm_scaffold_1233_3
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(1436..2173)
DNA (738bp) protein (246aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGJ7_9CHLR
13_2_20cm_scaffold_1233_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(2170..2550)
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL19_SYMTH
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplS; 50S ribosomal protein L19
13_2_20cm_scaffold_1233_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2555..3166)
DNA (612bp) protein (204aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_2_20cm_scaffold_1233_6
unknown

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comp(3153..3365)
DNA (213bp) protein (71aa)

This feature has no annotations

13_2_20cm_scaffold_1233_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(3422..3739)
DNA (318bp) protein (106aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIA7_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsP; 30S ribosomal protein S16
13_2_20cm_scaffold_1233_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3773..5212
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036C55AD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_1233_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5193..6413)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_1233_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6410..7570)
DNA (1161bp) protein (387aa)
Negative regulator of genetic competence ClpC/mecB n=1 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=B5Y8T4_COPPD
AAA ATPase central domain protein
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_1233_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(7575..8126)
DNA (552bp) protein (184aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_2_20cm_scaffold_1233_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8315..9013)
DNA (699bp) protein (233aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B408_DESCC
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase (SpoU)
13_2_20cm_scaffold_1233_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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9176..9985
DNA (810bp) protein (270aa)
phosphomethylpyrimidine kinase n=1 Tax=Thermus scotoductus RepID=UPI000368D7B7
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphomethylpyrimidine kinase ThiD
13_2_20cm_scaffold_1233_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10214..10696
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQ29_ROSS1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein
13_2_20cm_scaffold_1233_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(10777..11619)
DNA (843bp) protein (281aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ0_GEMAT
inosine guanosine and xanthosine phosphorylase family
13_2_20cm_scaffold_1233_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11616..13028)
DNA (1413bp) protein (471aa)
Na+ dependent nucleoside transporter domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VY0_SOLUE
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Na+ dependent nucleoside transporter
13_2_20cm_scaffold_1233_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13029..14273)
DNA (1245bp) protein (415aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
add; adenosine deaminase (EC:3.5.4.4)
Adenosine deaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ1_GEMAT
13_2_20cm_scaffold_1233_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14270..15793)
DNA (1524bp) protein (508aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
2',3'-cyclic-nucleotide 2'-phosphodiesterase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] id=24473036 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
5'-Nucleotidase domain-containing protein
13_2_20cm_scaffold_1233_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15845..16738
DNA (894bp) protein (298aa)
Putative hydrolase (Metallo-beta-lactamase superfamily) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN56_SINAD
hydrolase
Putative hydrolase (Metallo-beta-lactamase superfamily) {ECO:0000313|EMBL:AGA30809.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphae
13_2_20cm_scaffold_1233_20
unknown

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16873..17148
DNA (276bp) protein (92aa)

This feature has no annotations

13_2_20cm_scaffold_1233_21
unknown

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17145..17297
DNA (153bp) protein (51aa)

This feature has no annotations

13_2_20cm_scaffold_1233_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17304..17708
DNA (405bp) protein (135aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Protein tyrosine phosphatase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UGE2_ANASK
protein tyrosine phosphatase
13_2_20cm_scaffold_1233_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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17853..18488
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI0003675CCA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying 23 items

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