ggKbase home page

13_2_20cm_scaffold_845

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_845_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1217..2743
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEG6_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92913.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_845_2
unknown

Not on your lists

comp(2810..3451)
DNA (642bp) protein (214aa)

This feature has no annotations

13_2_20cm_scaffold_845_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3527..4717)
DNA (1191bp) protein (397aa)
Putative aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A624_GEMAT
putative aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative aminotransferase
13_2_20cm_scaffold_845_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4714..5499)
DNA (786bp) protein (262aa)
Putative peptide ABC transporter permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A623_GEMAT
putative peptide ABC transporter permease protein
Putative peptide ABC transporter permease protein {ECO:0000313|EMBL:BAH37683.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatim
13_2_20cm_scaffold_845_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5528..6682
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA63_GEMAT
Patatin
Patatin {ECO:0000313|EMBL:AHG91762.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_845_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6695..7813)
DNA (1119bp) protein (373aa)
glycoside hydrolase; K13668 phosphatidylinositol alpha-1,6-mannosyltransferase [EC:2.4.1.-] id=24657126 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:ABC45158.1}; EC=2.4.1.- {ECO:0000313|EMBL:ABC45158.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae s
glycoside hydrolase
13_2_20cm_scaffold_845_7
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(7873..9051)
DNA (1179bp) protein (393aa)
Glycosyl transferase group 1 n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S3E1_9CYAN
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:AFY65147.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
13_2_20cm_scaffold_845_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9152..9928
DNA (777bp) protein (259aa)
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase {ECO:0000313|EMBL:BAH40163.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH40163.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" sou
Glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACD6_GEMAT
13_2_20cm_scaffold_845_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9945..10661
DNA (717bp) protein (239aa)
Polysaccharide deacetylase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W3L6_DESAS
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AHG89025.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_845_10
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(10658..11761)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00035E4FED
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACZ09940.1}; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33
13_2_20cm_scaffold_845_11
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11791..12708
DNA (918bp) protein (306aa)
Glycosyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1EAI9_9BURK
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:EJE49441.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
13_2_20cm_scaffold_845_12
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

12705..13661
DNA (957bp) protein (319aa)
Uncharacterized protein id=2482461 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
glycosyltransferase Tax=GWA1_Bdellovibrionales_52_35_curated
glycosyltransferase
13_2_20cm_scaffold_845_13
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13634..14599)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI00036485F8
Glycosyltransferase {ECO:0000313|EMBL:EWC60394.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;
glycosyl transferase group 1
13_2_20cm_scaffold_845_14
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14596..15210)
DNA (615bp) protein (205aa)
Methyltransferase type 11 n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QHN2_CATAD
3-demethylubiquinone-9 3-methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACU71057.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain
13_2_20cm_scaffold_845_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15250..16209
DNA (960bp) protein (320aa)
CgeB family protein n=1 Tax=Desulfovibrio vulgaris (strain RCH1) RepID=E3IRC0_DESVR
CgeB family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
CgeB family protein
13_2_20cm_scaffold_845_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16194..17054)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG26_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58009.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinen
13_2_20cm_scaffold_845_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17057..18859)
DNA (1803bp) protein (601aa)
msbA; lipid A export ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Lipid A export ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A621_GEMAT
ABC transporter transmembrane region
13_2_20cm_scaffold_845_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18860..20461)
DNA (1602bp) protein (534aa)
Putative response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A620_GEMAT
putative response regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative response regulator
13_2_20cm_scaffold_845_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20519..21481
DNA (963bp) protein (321aa)
Glycosyl transferase family 9 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XV96_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETW99321.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
family 9 glycosyl transferase
13_2_20cm_scaffold_845_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21478..21855
DNA (378bp) protein (126aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_scaffold_845_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21863..22762
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A618_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_845_22
unknown

Not on your lists

comp(22714..23160)
DNA (447bp) protein (149aa)

This feature has no annotations

13_2_20cm_scaffold_845_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23228..23977
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein GAU_0635 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=Y635_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
UPF0082 protein yeeN
13_2_20cm_scaffold_845_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

23979..24461
DNA (483bp) protein (161aa)
ruvC; Holliday junction endonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A616_GEMAT
Crossover junction endodeoxyribonuclease ruvC
13_2_20cm_scaffold_845_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25014..25190
DNA (177bp) protein (59aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_scaffold_845_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

25187..26224
DNA (1038bp) protein (346aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RUVB_GEMAT
Holliday junction ATP-dependent DNA helicase ruvB
13_2_20cm_scaffold_845_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

26238..27332
DNA (1095bp) protein (365aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) PF0_DESK7">RepID=F6CPF0_DESK7
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
13_2_20cm_scaffold_845_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

27329..28792
DNA (1464bp) protein (488aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Queuine tRNA-ribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A609_GEMAT
Queuine tRNA-ribosyltransferase
13_2_20cm_scaffold_845_29
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

28789..29337
DNA (549bp) protein (183aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gemmatimonadetes_66_8_curated
def; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYF5_RHIFR
13_2_20cm_scaffold_845_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

29337..30272
DNA (936bp) protein (312aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Methionyl-tRNA formyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A606_GEMAT
Methionyl-tRNA formyltransferase
Displaying items 1-30 of 35 in total

View Taxonomy