ggKbase home page

13_2_20cm_scaffold_1596

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1596_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..684
DNA (684bp) protein (228aa)
Putative thioesterase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI90_9GAMM
Putative thioesterase {ECO:0000313|EMBL:EIL99181.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thi
13_2_20cm_scaffold_1596_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(642..1334)
DNA (693bp) protein (231aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
lepB1; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8M9_ACIC5
13_2_20cm_scaffold_1596_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1530..2231)
DNA (702bp) protein (234aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidoba
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003666200
16S ribosomal RNA methyltransferase RsmE
13_2_20cm_scaffold_1596_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(2422..3564)
DNA (1143bp) protein (381aa)
Chaperone protein DnaJ n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B33_SOLUE
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
molecular chaperone DnaJ
13_2_20cm_scaffold_1596_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(3583..4179)
DNA (597bp) protein (199aa)
Protein GrpE n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKA8_THEM7
heat shock protein GrpE; K03687 molecular chaperone GrpE Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
GrpE protein HSP-70 cofactor
13_2_20cm_scaffold_1596_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(4209..5252)
DNA (1044bp) protein (348aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK5_KORVE
heat shock gene repressor HrcA; K03705 heat-inducible transcriptional repressor Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
heat-inducible transcription repressor HrcA
13_2_20cm_scaffold_1596_7
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(5424..6872)
DNA (1449bp) protein (483aa)
Aldehyde dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIT7_9BACT
Aldehyde dehydrogenase {ECO:0000313|EMBL:BAL56073.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
aldehyde dehydrogenase
13_2_20cm_scaffold_1596_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7661..8377
DNA (717bp) protein (239aa)
HNH endonuclease n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE61_ALIDK
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:AEB86023.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrific
13_2_20cm_scaffold_1596_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8440..8865
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILX6_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42124.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_scaffold_1596_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9125..9751)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VQ7_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_2_20cm_scaffold_1596_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9963..11279)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037F5953
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ADB40544.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain
13_2_20cm_scaffold_1596_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(11373..11840)
DNA (468bp) protein (156aa)
Peptidoglycan-binding domain 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRR4_KORVE
peptidoglycan binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
peptidoglycan binding domain-containing protein
13_2_20cm_scaffold_1596_13
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(11880..13451)
DNA (1572bp) protein (524aa)
Peptidase S1C, Do n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRR3_KORVE
peptidase S1C, Do Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
peptidase S1C, Do
13_2_20cm_scaffold_1596_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

13844..14428
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W75_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABJ86090.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" so
13_2_20cm_scaffold_1596_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

14447..15517
DNA (1071bp) protein (357aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W76_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_2_20cm_scaffold_1596_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

15645..16043
DNA (399bp) protein (133aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_2_20cm_scaffold_1596_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

16158..16880
DNA (723bp) protein (241aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_2_20cm_scaffold_1596_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

17030..17281
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DAG6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
13_2_20cm_scaffold_1596_19
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17755..19020
DNA (1266bp) protein (422aa)
Threonine synthase {ECO:0000313|EMBL:AEU37514.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AEU37514.1};; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source=
Threonine synthase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NTV8_GRAMM
threonine synthase
13_2_20cm_scaffold_1596_20

Not on your lists

19047..19325
DNA (279bp) protein (93aa)
Molybdopterin biosynthesis-like protein MoeZ n=1 Tax=mine drainage metagenome RepID=T0Z647_9ZZZZ
Molybdopterin biosynthesis-like protein MoeZ {ECO:0000313|EMBL:EQD40513.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
molybdenum cofactor biosynthesis protein MoeB
13_2_20cm_scaffold_1596_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19542..20024)
DNA (483bp) protein (161aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036651CB
O-6-methylguanine DNA methyltransferase
13_2_20cm_scaffold_1596_22
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(20030..20608)
DNA (579bp) protein (193aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NLR4_MARHT
peptide deformylase
13_2_20cm_scaffold_1596_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20657..21667)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361E2FC rbh
Predicted dehydrogenase {ECO:0000313|EMBL:CDM65138.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
oxidoreductase domain-containing protein
13_2_20cm_scaffold_1596_24
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

21815..22060
DNA (246bp) protein (82aa)
AhpC/TSA family protein n=1 Tax=Streptomyces sp. e14 RepID=D6JZD6_9ACTO
thiol-specific antioxidant protein
redoxin domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_2_20cm_scaffold_1596_25
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

22070..22381
DNA (312bp) protein (104aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Thermotoga sp. EMP RepID=J9HJ44_9THEM
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
13_2_20cm_scaffold_1596_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22892..25648)
DNA (2757bp) protein (919aa)
Alpha-L-rhamnosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ16_OPITP
Alpha-L-rhamnosidase {ECO:0000313|EMBL:AHG93182.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
alpha-L-rhamnosidase
13_2_20cm_scaffold_1596_27
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

26214..26660
DNA (447bp) protein (149aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
leuC; 3-isopropylmalate isomerase subunit, dehydratase component (EC:4.2.1.33)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003738C0E
Displaying 27 items

View Taxonomy