ggKbase home page

13_2_20cm_scaffold_1587

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1587_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..419)
DNA (417bp) protein (139aa)
peptidase S1 and S6, chymotrypsin/Hap Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Peptidase S1 and S6, chymotrypsin/Hap id=4543282 bin=GWA2_OP3_52_12 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
peptidase S1 and S6, chymotrypsin/Hap
13_2_20cm_scaffold_1587_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(479..1087)
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKB7_CHLTF
13_2_20cm_scaffold_1587_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(1093..2049)
DNA (957bp) protein (319aa)
methenyltetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67
Bifunctional protein FolD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=FOLD_KORVE
methenyltetrahydrofolate cyclohydrolase
13_2_20cm_scaffold_1587_4
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

2216..2452
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_2_20cm_scaffold_1587_5
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

2483..2884
DNA (402bp) protein (134aa)
PilT domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PilT protein-like id=4911635 bin=GWC2_Syntrophus__56_31 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
PilT domain-containing protein
13_2_20cm_scaffold_1587_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3263..4087
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABZ0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40017.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_2_20cm_scaffold_1587_7
unknown

Not on your lists

4196..4921
DNA (726bp) protein (242aa)

This feature has no annotations

13_2_20cm_scaffold_1587_8
unknown

Not on your lists

comp(5022..5885)
DNA (864bp) protein (288aa)

This feature has no annotations

13_2_20cm_scaffold_1587_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(5993..8425)
DNA (2433bp) protein (811aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003636153 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ85732.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_2_20cm_scaffold_1587_10
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

8741..9046
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6J8_METEZ
hypothetical protein Tax=RBG_16_Zixibacteria_53_22_curated
hypothetical protein
13_2_20cm_scaffold_1587_11
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

9098..9715
DNA (618bp) protein (206aa)
Molybdopterin binding protein n=1 Tax=uncultured bacterium F25-01 RepID=I3VIH3_9BACT
oxidoreductase protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
oxidoreductase protein
13_2_20cm_scaffold_1587_12
unknown

Not on your lists

10051..10554
DNA (504bp) protein (168aa)

This feature has no annotations

13_2_20cm_scaffold_1587_13
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10703..11416
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036BF70C rbh
sensory transcriptional regulator
Putative sensory transcriptional regulator {ECO:0000313|EMBL:ACO33414.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium c
13_2_20cm_scaffold_1587_14
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(11527..11988)
DNA (462bp) protein (154aa)
cell shape determination protein CcmA n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B33437
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW67518.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC
13_2_20cm_scaffold_1587_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12152..12565)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPV0_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_2_20cm_scaffold_1587_16
unknown

Not on your lists

comp(12579..12812)
DNA (234bp) protein (78aa)

This feature has no annotations

13_2_20cm_scaffold_1587_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(12809..13336)
DNA (528bp) protein (176aa)
Sigma-24, ECF subfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPU9_KORVE
ECF subfamily RNA polymerase sigma-24 factor
Sigma-24, ECF subfamily {ECO:0000313|EMBL:ABF41101.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_scaffold_1587_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13577..16738)
DNA (3162bp) protein (1054aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Ribonuclease, Rne/Rng family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN1_KORVE
ribonuclease
13_2_20cm_scaffold_1587_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(17154..17420)
DNA (267bp) protein (89aa)
Cell elongation-specific peptidoglycan biosynthesis regulator RodA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN2_KORVE
rod shape-determining protein RodA
Cell elongation-specific peptidoglycan biosynthesis regulator RodA {ECO:0000313|EMBL:ABF40468.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribac
13_2_20cm_scaffold_1587_20
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(17381..18235)
DNA (855bp) protein (285aa)
Cell elongation-specific peptidoglycan biosynthesis regulator RodA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN2_KORVE
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rod shape-determining protein RodA
13_2_20cm_scaffold_1587_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(18346..20283)
DNA (1938bp) protein (646aa)
Peptidoglycan glycosyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN3_KORVE rbh
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
peptidoglycan glycosyltransferase
13_2_20cm_scaffold_1587_22
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

20671..21339
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289AC93
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
hypothetical protein
13_2_20cm_scaffold_1587_23

Not on your lists

21440..22648
DNA (1209bp) protein (403aa)
Threonine synthase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JMI7_9BACT
L-threonine synthase {ECO:0000313|EMBL:KKR10045.1}; TaxID=1618813 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_39_18.;"
threonine synthase
13_2_20cm_scaffold_1587_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(22695..23222)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN5_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40465.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_scaffold_1587_25
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(23219..24121)
DNA (903bp) protein (301aa)
Rod shape-determining protein MreC n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN6_KORVE
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rod shape-determining protein MreC
13_2_20cm_scaffold_1587_26
unknown

Not on your lists

comp(24188..24916)
DNA (729bp) protein (243aa)

This feature has no annotations

13_2_20cm_scaffold_1587_27
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(24929..25969)
DNA (1041bp) protein (347aa)
Cell shape determining protein MreB n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F7D1_ACIC5
rod shape-determining protein MreB
Cell shape determining protein MreB {ECO:0000313|EMBL:ACO34271.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulat
13_2_20cm_scaffold_1587_28
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26108..26461)
DNA (354bp) protein (118aa)
Fibronectin, type III n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRN8_KORVE
fibronectin, type III Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
fibronectin type III
Displaying 28 items

View Taxonomy