ggKbase home page

13_2_20cm_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_10_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(395..1078)
DNA (684bp) protein (228aa)
Putative phophoslipid binding protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RL3_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
phophoslipid binding protein
13_2_20cm_scaffold_10_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

1322..2242
DNA (921bp) protein (307aa)
Thiol-disulfide isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Thiol-disulfide isomerase-like protein id=2622588 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
alkyl hydroperoxide reductase
13_2_20cm_scaffold_10_3
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

2425..2895
DNA (471bp) protein (157aa)
Putative translation initiation inhibitor, yjgf family n=1 Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUK2_9BACT
putative translation initiation inhibitor, yjgF family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
endoribonuclease L-PSP
13_2_20cm_scaffold_10_4
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3035..3646
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3BA5D
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGK96070.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
13_2_20cm_scaffold_10_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

4156..5865
DNA (1710bp) protein (570aa)
Outer membrane efflux protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NG6_SOLUE
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ABJ88804.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
13_2_20cm_scaffold_10_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

5879..7177
DNA (1299bp) protein (433aa)
Secretion protein HlyD family protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NG8_SOLUE rbh
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABJ88802.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soli
13_2_20cm_scaffold_10_7
GWF2_Planctomycetes_50_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

7256..8845
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000366074E
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B Tax=GWF2_Planctomycetes_50_10_curated
EmrB/QacA family drug resistance transporter
13_2_20cm_scaffold_10_8
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8905..9558
DNA (654bp) protein (218aa)
RNA polymerase sigma factor n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1R1_TERSS
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain AT
13_2_20cm_scaffold_10_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9655..10506)
DNA (852bp) protein (284aa)
Prephenate dehydratase {ECO:0000313|EMBL:CDM65582.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CDM65582.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyr
Prephenate dehydratase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1K7_ACIC5
prephenate dehydratase
13_2_20cm_scaffold_10_10
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

10708..11235
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMX9_IGNAJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH50336.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacteriu
13_2_20cm_scaffold_10_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

11976..13373
DNA (1398bp) protein (466aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus
Dihydrolipoyl dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIJ6_KORVE
dihydrolipoamide dehydrogenase
13_2_20cm_scaffold_10_12
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

13752..14456
DNA (705bp) protein (235aa)
lipoate-protein ligase B (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX3_9BACT
13_2_20cm_scaffold_10_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14472..15737
DNA (1266bp) protein (422aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit {ECO:0000313|EMBL:CDM66807.1}; EC=1.2.4.4 {ECO:0000313|EMBL:CDM66807.1};; TaxID=454194 species="Bacteria; Acidobact
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000378E2E1
13_2_20cm_scaffold_10_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

15740..16759
DNA (1020bp) protein (340aa)
bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) (EC:1.2.4.4) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037B5EC6
13_2_20cm_scaffold_10_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

16787..18172
DNA (1386bp) protein (462aa)
dihydrolipoyllysine-residue succinyltransferase (EC:2.3.1.61)
Dihydrolipoyllysine-residue succinyltransferase {ECO:0000313|EMBL:ABJ81913.1}; EC=2.3.1.61 {ECO:0000313|EMBL:ABJ81913.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales;
Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AK3_SOLUE
13_2_20cm_scaffold_10_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18519..19733
DNA (1215bp) protein (405aa)
Response regulator receiver modulated serine phosphatase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJL8_KORVE rbh
response regulator receiver modulated serine phosphatase
Response regulator receiver modulated serine phosphatase {ECO:0000313|EMBL:ABF42932.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" sou
13_2_20cm_scaffold_10_17
RIFOXYB2_FULL_PER_ii_54_17_curated, PER-ii, Bacteria

Not on your lists

comp(19889..20185)
DNA (297bp) protein (99aa)
gyrA; DNA gyrase (subunit A) (EC:5.99.1.3) Tax=RIFOXYB2_FULL_PER_ii_54_17_curated
13_2_20cm_scaffold_10_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(20440..22206)
DNA (1767bp) protein (589aa)
Lytic transglycosylase, catalytic n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU96_KORVE
lytic transglycosylase, catalytic
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:ABF39554.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source=
13_2_20cm_scaffold_10_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

22396..23541
DNA (1146bp) protein (382aa)
Beta-lactamase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISZ8_KORVE rbh
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABF40002.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versati
13_2_20cm_scaffold_10_20
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23558..24637)
DNA (1080bp) protein (360aa)
3-oxoacyl-[acyl-carrier protein] reductase protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TTZ0_9DELT
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EYF00054.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.
short-chain dehydrogenase
13_2_20cm_scaffold_10_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

24665..25381
DNA (717bp) protein (239aa)
Transcriptional regulator n=1 Tax=uncultured bacterium RepID=L7Y6Q0_9BACT
TetR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
regulatory protein TetR
13_2_20cm_scaffold_10_22
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

25704..25910
DNA (207bp) protein (69aa)
Cold-shock DNA-binding protein family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QC1_SOLUE
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
cold-shock DNA-binding protein family protein
13_2_20cm_scaffold_10_23

Not on your lists

comp(26039..27217)
DNA (1179bp) protein (393aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00036185D0
Marine sediment metagenome DNA, contig: S01H4_L01055 {ECO:0000313|EMBL:GAG70065.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_2_20cm_scaffold_10_24
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(27214..28254)
DNA (1041bp) protein (347aa)
asparate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" sourc
Aspartokinase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3Q0_THERP
13_2_20cm_scaffold_10_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(28582..29742)
DNA (1161bp) protein (387aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
twitching motility protein; K02669 twitching motility protein PilT id=12555796 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
twitching motility protein
13_2_20cm_scaffold_10_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

30165..30665
DNA (501bp) protein (167aa)
Uncharacterized protein, possibly involved in utilization of glycolate and propanediol id=4954842 bin=GWC2_Methylomirabilis_70_24 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glcG; GlcG Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_scaffold_10_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

30704..32134
DNA (1431bp) protein (477aa)
Amidohydrolase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMQ6_9FIRM
peptidase dimerization domain protein
Peptidase dimerization domain protein {ECO:0000313|EMBL:AHG88923.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_10_28
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

32216..32713
DNA (498bp) protein (166aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RIFCSPLOWO2_02_FULL_Acidobac
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L2C2_THERP
13_2_20cm_scaffold_10_29
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(32761..33933)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X666_ACISM
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_2_20cm_scaffold_10_30
unknown

Not on your lists

comp(34209..34775)
DNA (567bp) protein (189aa)

This feature has no annotations

Displaying items 1-30 of 113 in total

View Taxonomy