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13_2_20cm_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_29_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(762..1196)
DNA (435bp) protein (145aa)
hypothetical protein id=14425654 bin=bin1_lowGC species=Spirosoma panaciterrae genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein Tax=CSP1_2_Dadabacteria
histidine kinase
13_2_20cm_scaffold_29_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(1360..1707)
DNA (348bp) protein (116aa)
type IV pilus assembly PilZ Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
type IV pilus assembly PilZ
13_2_20cm_scaffold_29_3
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1880..3418)
DNA (1539bp) protein (513aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ16_KORVE
Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Fis family transcriptional regulator
13_2_20cm_scaffold_29_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(3372..4577)
DNA (1206bp) protein (402aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=G9XGX8_DESHA
two-component system sensory histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_2_20cm_scaffold_29_5
unknown

Not on your lists

4888..5235
DNA (348bp) protein (116aa)

This feature has no annotations

13_2_20cm_scaffold_29_6
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

5480..6763
DNA (1284bp) protein (428aa)
Diguanylate cyclase n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BBB8_TURPD
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AFM14575.1}; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATCC BAA-1111 / DSM 215
13_2_20cm_scaffold_29_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6882..7388
DNA (507bp) protein (169aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J0F3_FRASU
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:ADP81582.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (st
13_2_20cm_scaffold_29_8
unknown

Not on your lists

comp(7444..7944)
DNA (501bp) protein (167aa)

This feature has no annotations

13_2_20cm_scaffold_29_9
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists


8198..8431
DNA (234bp) protein (78aa)
Ribosomal protein L31 n=1 Tax=mine drainage metagenome RepID=E6QL69_9ZZZZ
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
50S ribosomal protein L31
13_2_20cm_scaffold_29_10
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

8643..10214
DNA (1572bp) protein (524aa)
putative alternative thymidylate synthase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
putative alternative thymidylate synthase id=5802646 bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
putative alternative thymidylate synthase
13_2_20cm_scaffold_29_11
unknown

Not on your lists

10845..11504
DNA (660bp) protein (220aa)

This feature has no annotations

13_2_20cm_scaffold_29_12
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(11814..12929)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000369D06B
Rieske 2Fe-2S domain-containing protein
Rieske 2Fe-2S domain protein {ECO:0000313|EMBL:ACO34147.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (str
13_2_20cm_scaffold_29_13
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13192..14283
DNA (1092bp) protein (364aa)
Peptide chain release factor 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RF1_KORVE
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Can
13_2_20cm_scaffold_29_14
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

14319..14825
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVX9_9FIRM
sigma-70 family RNA polymerase sigma factor Tax=RBG_16_Zixibacteria_48_11_curated
hypothetical protein
13_2_20cm_scaffold_29_15
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14822..15850
DNA (1029bp) protein (343aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NU67_GRAMM
protein-(glutamine-N5) methyltransferase
13_2_20cm_scaffold_29_16
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

15907..17151
DNA (1245bp) protein (415aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=234267 species="Bacteria; Acidobacteria; Soli
DNA polymerase IV n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AR7_SOLUE
13_2_20cm_scaffold_29_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

17231..18391
DNA (1161bp) protein (387aa)
Serine phosphatase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029P3_SOLUE
serine phosphatase
Serine phosphatase {ECO:0000313|EMBL:ABJ82233.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (st
13_2_20cm_scaffold_29_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18522..19895
DNA (1374bp) protein (458aa)
Metal dependent phosphohydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUE8_KORVE
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABF39502.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatil
13_2_20cm_scaffold_29_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

20115..22541
DNA (2427bp) protein (809aa)
Lon protease {ECO:0000255|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000255|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000255|HAMAP-Rule:MF_01973}; TaxID=204669 species="Bacteria; Acidobacte
Lon protease n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=LON_KORVE
ATP-dependent protease La
13_2_20cm_scaffold_29_20
unknown

Not on your lists

22851..23429
DNA (579bp) protein (193aa)

This feature has no annotations

13_2_20cm_scaffold_29_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23426..26113)
DNA (2688bp) protein (896aa)
Serine/threonine protein kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YB1_SOLUE rbh
serine/threonine protein kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
serine/threonine protein kinase
13_2_20cm_scaffold_29_22
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(26256..26597)
DNA (342bp) protein (114aa)
UPF0145 protein AciPR4_3146 n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V6V2_TERSS
hypothetical protein
UPF0145 protein AciPR4_3146 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain
13_2_20cm_scaffold_29_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

26722..27909
DNA (1188bp) protein (396aa)
Glycosyltransferase, probably involved in cell wall biogenesis n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHV2_CHLTF
glycosyltransferase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
glycosyltransferase
13_2_20cm_scaffold_29_24
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

28408..29028
DNA (621bp) protein (207aa)
two component transcriptional regulator, LuxR family id=14632358 bin=bin9_gal15 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
two component transcriptional regulator, LuxR family Tax=CSP1_3_Armatimonadetes
transcriptional regulator, LuxR family protein
13_2_20cm_scaffold_29_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(29114..29728)
DNA (615bp) protein (205aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermace
Superoxide dismutase n=3 Tax=Rhodothermus RepID=D0MH29_RHOM4
Superoxide dismutase
13_2_20cm_scaffold_29_26
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(30039..31175)
DNA (1137bp) protein (379aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein id=14425901 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
iron-sulfur cluster binding protein
13_2_20cm_scaffold_29_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(31289..31630)
DNA (342bp) protein (114aa)
Anti-sigma factor antagonist n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INN3_KORVE
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_2_20cm_scaffold_29_28
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(31652..32137)
DNA (486bp) protein (162aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CU5_SOLUE
anti-sigma regulatory factor
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:ABJ81121.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Cand
13_2_20cm_scaffold_29_29
unknown

Not on your lists

comp(32268..32450)
DNA (183bp) protein (61aa)

This feature has no annotations

13_2_20cm_scaffold_29_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

32486..34471
DNA (1986bp) protein (662aa)
X-Pro dipeptidyl-peptidase C-terminal domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028H9_SOLUE
X-Pro dipeptidyl-peptidase domain-containing protein; K06978 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
X-Pro dipeptidyl-peptidase domain-containing protein
Displaying items 1-30 of 48 in total

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