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13_2_20cm_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_110_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..153
-----------------
DNA (153bp)
protein (51aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
13_2_20cm_scaffold_110_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

508..1476
-----------------
DNA (969bp)
protein (323aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14628122 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_110_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1568..2545
-----------------
DNA (978bp)
protein (326aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14626716 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_110_4
unknown

Not on your lists

comp(2580..3002)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

13_2_20cm_scaffold_110_5
unknown

Not on your lists

3545..4165
-----------------
DNA (621bp)
protein (207aa)

This feature has no annotations

13_2_20cm_scaffold_110_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4072..4953)
-----------------
DNA (882bp)
protein (294aa)
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_110_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5007..6008
-----------------
DNA (1002bp)
protein (334aa)
aminocarboxymuconate-semialdehyde decarboxylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative TIM-barrel fold metal-dependent hydrolase id=3830378 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
aminocarboxymuconate-semialdehyde decarboxylase
13_2_20cm_scaffold_110_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6017..6871
-----------------
DNA (855bp)
protein (285aa)
amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Amino acid/amide ABC transporter membrane protein 1, HAAT family id=4547724 bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_2_20cm_scaffold_110_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6868..7836
-----------------
DNA (969bp)
protein (323aa)
amino acid ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC-type transporter, integral membrane subunit id=4827658 bin=GWA2_Methylomirabilis_73_35 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
amino acid ABC transporter
13_2_20cm_scaffold_110_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7821..9062
-----------------
DNA (1242bp)
protein (414aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Extracellular ligand-binding receptor
13_2_20cm_scaffold_110_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9067..9822
-----------------
DNA (756bp)
protein (252aa)
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter permease protein id=3033655 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
13_2_20cm_scaffold_110_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9822..10517
-----------------
DNA (696bp)
protein (232aa)
ABC transporter related id=4827655 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein Tax=GWA2_Rokubacteria_73_35_curated
putative ABC transporter
13_2_20cm_scaffold_110_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10517..11578
-----------------
DNA (1062bp)
protein (354aa)
luciferase-like monooxygenase n=1 Tax=Bacillus sp. 10403023 RepID=UPI000288D90A
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like monooxygenase
13_2_20cm_scaffold_110_14
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

11575..12093
-----------------
DNA (519bp)
protein (173aa)
hypothetical protein n=1 Tax=Gordonia polyisoprenivorans RepID=UPI00037ACFED
hypothetical protein Tax=RBG_16_Chloroflexi_64_32_curated
hypothetical protein
13_2_20cm_scaffold_110_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12050..12925)
-----------------
DNA (876bp)
protein (292aa)
Tartronate semialdehyde reductase id=4547685 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Rahnella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxy-3-oxopropionate reductase Tax=GWA2_Rokubacteria_70_23_curated
6-phosphogluconate dehydrogenase protein
13_2_20cm_scaffold_110_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12941..13567)
-----------------
DNA (627bp)
protein (209aa)
Isochorismatase hydrolase id=4827652 bin=GWA2_Methylomirabilis_73_35 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
isochorismatase hydrolase Tax=GWA2_Rokubacteria_73_35_curated
isochorismatase hydrolase
13_2_20cm_scaffold_110_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13624..15012
-----------------
DNA (1389bp)
protein (463aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UbiD decarboxylase family protein id=4827625 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_2_20cm_scaffold_110_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15009..15677
-----------------
DNA (669bp)
protein (223aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627784 bin=bin7_NC10_sister species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_110_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15685..16182
-----------------
DNA (498bp)
protein (166aa)
id=4885132 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14625322 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_110_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16201..19107)
-----------------
DNA (2907bp)
protein (969aa)
glpC; D-lactate dehydrogenase (cytochrome) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glr3436 protein id=3830908 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
glpC; D-lactate dehydrogenase (cytochrome)
13_2_20cm_scaffold_110_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19127..19669
-----------------
DNA (543bp)
protein (181aa)
Thiol-disulfide isomerase and thioredoxins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiol-disulfide isomerase and thioredoxins id=3830905 bin=GWF2_Methylomirabilis_70_14 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide oxidoreductase
13_2_20cm_scaffold_110_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19683..20708)
-----------------
DNA (1026bp)
protein (342aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional repressor; K00845 glucokinase [EC:2.7.1.2] id=14627250 bin=bin7_NC10_sister species=Shinella zoogloeoides genus=Shinella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ROK family protein
13_2_20cm_scaffold_110_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20713..21456)
-----------------
DNA (744bp)
protein (248aa)
YdjC-like protein id=3269465 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
YdjC-like protein; K03478 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_110_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21467..22183)
-----------------
DNA (717bp)
protein (239aa)
Methylase id=3269468 bin=GWA2_Methylomirabilis_73_35 species=Methanothermobacter marburgensis genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase-like protein
13_2_20cm_scaffold_110_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22173..22484)
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=3269471 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_110_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22612..22731)
-----------------
DNA (120bp)
protein (40aa)
id=14627246 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14627246 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_110_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22757..24478)
-----------------
DNA (1722bp)
protein (574aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3269474 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_110_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24497..24994)
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269477 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_110_29
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(24991..27600)
-----------------
DNA (2610bp)
protein (870aa)
helicase Tax=GWC2_Rokubacteria_70_16_curated
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
helicase
13_2_20cm_scaffold_110_30
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27748..28578
-----------------
DNA (831bp)
protein (277aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003774BBE
Phytanoyl-CoA dioxygenase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
phytanoyl-coA dioxygenase
Displaying items 1-30 of 33 in total

View Taxonomy