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13_2_20cm_scaffold_1222

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1222_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..184
-----------------
DNA (183bp)
protein (61aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] id=14625564 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hyuA; hydantoin utilization N-methylhydantoinase (EC:3.5.2.14)
13_2_20cm_scaffold_1222_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

181..1812
-----------------
DNA (1632bp)
protein (544aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14625563 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
13_2_20cm_scaffold_1222_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1918..2856)
-----------------
DNA (939bp)
protein (313aa)
id=4814771 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4814771 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1222_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2965..4314)
-----------------
DNA (1350bp)
protein (450aa)
pilR2; nitrogen regulation protein NR(I); K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=4814770 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
zraR; transcriptional regulatory protein ZraR
13_2_20cm_scaffold_1222_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4438..4767
-----------------
DNA (330bp)
protein (110aa)
Thioredoxin id=4814769 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trxA; thioredoxin 1, redox factor Tax=GWC2_Rokubacteria_70_16_curated
trxA; thioredoxin 1, redox factor
13_2_20cm_scaffold_1222_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4870..6321
-----------------
DNA (1452bp)
protein (484aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] id=14625549 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpE; anthranilate synthase, component I (EC:4.1.3.27)
13_2_20cm_scaffold_1222_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6318..6890
-----------------
DNA (573bp)
protein (191aa)
trpG; anthranilate synthase component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamine amidotransferase of anthranilate synthase id=3775487 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
anthranilate synthetase component II
13_2_20cm_scaffold_1222_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6887..7903
-----------------
DNA (1017bp)
protein (339aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase id=1724736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1222_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7900..9177
-----------------
DNA (1278bp)
protein (426aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775494 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_1222_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9177..10367
-----------------
DNA (1191bp)
protein (397aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1222_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10352..11023
-----------------
DNA (672bp)
protein (224aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dienelactone hydrolase family
13_2_20cm_scaffold_1222_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(11046..11519)
-----------------
DNA (474bp)
protein (158aa)
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17
13_2_20cm_scaffold_1222_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11516..12499)
-----------------
DNA (984bp)
protein (328aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1222_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(12519..13142)
-----------------
DNA (624bp)
protein (208aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S4
13_2_20cm_scaffold_1222_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(13152..13559)
-----------------
DNA (408bp)
protein (136aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_2_20cm_scaffold_1222_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13563..13982)
-----------------
DNA (420bp)
protein (140aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S13 id=4666312 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S13
13_2_20cm_scaffold_1222_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14043..14156)
-----------------
DNA (114bp)
protein (38aa)
hypothetical protein; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L36 id=4666311 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1222_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14204..14422)
-----------------
DNA (219bp)
protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=14625536 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
infA; translation initiation factor IF-1
13_2_20cm_scaffold_1222_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14419..15168)
-----------------
DNA (750bp)
protein (250aa)
map; methionine aminopeptidase (EC:3.4.11.18) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase (EC:3.4.11.18)
13_2_20cm_scaffold_1222_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15165..15743)
-----------------
DNA (579bp)
protein (193aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase
13_2_20cm_scaffold_1222_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(15744..17018)
-----------------
DNA (1275bp)
protein (425aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_2_20cm_scaffold_1222_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(17015..17482)
-----------------
DNA (468bp)
protein (156aa)
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L15
13_2_20cm_scaffold_1222_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(17472..17660)
-----------------
DNA (189bp)
protein (63aa)
50S ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
13_2_20cm_scaffold_1222_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(17641..18177)
-----------------
DNA (537bp)
protein (179aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsE; 30S ribosomal protein S5
13_2_20cm_scaffold_1222_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(18194..18559)
-----------------
DNA (366bp)
protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4799428 bin=GWC2_Methylomirabilis_70_24 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplR; 50S ribosomal protein L18
13_2_20cm_scaffold_1222_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(18556..19104)
-----------------
DNA (549bp)
protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplF; 50S ribosomal protein L6
13_2_20cm_scaffold_1222_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(19115..19510)
-----------------
DNA (396bp)
protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S8 id=4716768 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
30S ribosomal protein S8
13_2_20cm_scaffold_1222_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(19515..19700)
-----------------
DNA (186bp)
protein (62aa)
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
rpsZ; 30S ribosomal protein S14
13_2_20cm_scaffold_1222_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(19708..20415)
-----------------
DNA (708bp)
protein (236aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4799432 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplE; 50S ribosomal protein L5
13_2_20cm_scaffold_1222_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(20421..20750)
-----------------
DNA (330bp)
protein (110aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L24
Displaying items 1-30 of 43 in total

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