name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
13_2_20cm_scaffold_1419_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(137..997)
----------------- DNA (861bp) protein (287aa) |
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-70 family RNA polymerase sigma factor
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13_2_20cm_scaffold_1419_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(990..1682)
----------------- DNA (693bp) protein (231aa) |
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23
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13_2_20cm_scaffold_1419_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(1752..2051)
----------------- DNA (300bp) protein (100aa) |
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
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13_2_20cm_scaffold_1419_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(2226..2882)
----------------- DNA (657bp) protein (219aa) |
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-L-isoaspartate O-methyltransferase
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13_2_20cm_scaffold_1419_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(2882..3661)
----------------- DNA (780bp) protein (260aa) |
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbh
surE; 5'(3')-nucleotidase/polyphosphatase
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13_2_20cm_scaffold_1419_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(3789..4082)
----------------- DNA (294bp) protein (98aa) |
regulatory protein MerR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulator, MerR family id=4853974 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator
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13_2_20cm_scaffold_1419_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(4151..4432)
----------------- DNA (282bp) protein (94aa) |
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ihfA-1; integration host factor subunit alpha
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13_2_20cm_scaffold_1419_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(4442..5371)
----------------- DNA (930bp) protein (310aa) |
uncharacterized LOC100215998 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
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13_2_20cm_scaffold_1419_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(5379..6242)
----------------- DNA (864bp) protein (288aa) |
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
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13_2_20cm_scaffold_1419_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(6239..7603)
----------------- DNA (1365bp) protein (455aa) |
engA; GTP-binding protein EngA; K03977 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein Der
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13_2_20cm_scaffold_1419_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(7617..8948)
----------------- DNA (1332bp) protein (444aa) |
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
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13_2_20cm_scaffold_1419_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(8938..9510)
----------------- DNA (573bp) protein (191aa) |
pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_2_20cm_scaffold_1419_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(9522..10820)
----------------- DNA (1299bp) protein (433aa) |
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbh
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX Tax=GWA2_Rokubacteria_73_35_curated
GTP-binding protein HflX
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13_2_20cm_scaffold_1419_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(10817..11149)
----------------- DNA (333bp) protein (111aa) |
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=GWA2_Rokubacteria_73_35_curated
tRNA dimethylallyltransferase (EC:2.5.1.75)
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_2_20cm_scaffold_1419_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(11828..13504)
----------------- DNA (1677bp) protein (559aa) |
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutL id=4555220 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mutL; DNA mismatch repair protein MutL
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13_2_20cm_scaffold_1419_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(13501..16122)
----------------- DNA (2622bp) protein (874aa) |
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rbh
DNA mismatch repair protein MutS
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13_2_20cm_scaffold_1419_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(16115..16570)
----------------- DNA (456bp) protein (152aa) |
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein
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13_2_20cm_scaffold_1419_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(16614..16889)
----------------- DNA (276bp) protein (92aa) |
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleoid DNA-binding protein
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13_2_20cm_scaffold_1419_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(17173..18087)
----------------- DNA (915bp) protein (305aa) |
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] id=14627235 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
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13_2_20cm_scaffold_1419_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(18059..19771)
----------------- DNA (1713bp) protein (571aa) |
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rbh
rpsA; 30S ribosomal protein S1
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13_2_20cm_scaffold_1419_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(19797..20459)
----------------- DNA (663bp) protein (221aa) |
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
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13_2_20cm_scaffold_1419_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(20456..21145)
----------------- DNA (690bp) protein (230aa) |
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=4941221 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
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13_2_20cm_scaffold_1419_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(21169..22482)
----------------- DNA (1314bp) protein (438aa) |
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase id=4941220 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rbh
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13_2_20cm_scaffold_1419_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(22479..23327)
----------------- DNA (849bp) protein (283aa) |
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein id=4143295 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_2_20cm_scaffold_1419_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria
|
Not on your lists |
comp(23324..23557)
----------------- DNA (234bp) protein (78aa) |
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Histidinol-phosphate aminotransferase id=4941218 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hisC; histidinol-phosphate aminotransferase
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