ggKbase home page

13_2_20cm_scaffold_525

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_525_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(150..539)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379C2B8
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_2_20cm_scaffold_525_2
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(554..1759)
DNA (1206bp) protein (402aa)
ABC transporter, ATPase subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQI2_KORVE
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ABC transporter ATPase
13_2_20cm_scaffold_525_3
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(1756..2934)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B3ADD5
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
hypothetical protein
13_2_20cm_scaffold_525_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2934..4280)
DNA (1347bp) protein (449aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQI0_KORVE
efflux ABC transporter inner membrane protein
ABC efflux pump, inner membrane subunit {ECO:0000313|EMBL:ABF40870.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" s
13_2_20cm_scaffold_525_5
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(4319..5581)
DNA (1263bp) protein (421aa)
iron permease n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003658E1D
iron permease FTR1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
iron permease FTR1
13_2_20cm_scaffold_525_6
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5699..8743
DNA (3045bp) protein (1015aa)
Na-Ca exchanger/integrin-beta4 n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q114P2_TRIEI
Na-Ca exchanger/integrin-beta4
Na-Ca exchanger/integrin-beta4 {ECO:0000313|EMBL:ABG51032.1}; TaxID=203124 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (
13_2_20cm_scaffold_525_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(8827..9801)
DNA (975bp) protein (325aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=TRUB_SOLUE
13_2_20cm_scaffold_525_8
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9852..10220)
DNA (369bp) protein (123aa)
Ribosome-binding factor A n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=RBFA_THERP
ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
rbfA; ribosome-binding factor A
13_2_20cm_scaffold_525_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10240..10521)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000366BAE8
hypothetical protein; K09764 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_2_20cm_scaffold_525_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10550..12592)
DNA (2043bp) protein (681aa)
Translation initiation factor IF-2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=IF2_KORVE
translation initiation factor 2; K02519 translation initiation factor IF-2 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
translation initiation factor 2
13_2_20cm_scaffold_525_11
unknown

Not on your lists

12667..13068
DNA (402bp) protein (134aa)

This feature has no annotations

13_2_20cm_scaffold_525_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13490..14197)
DNA (708bp) protein (236aa)
NusA antitermination factor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIT2_KORVE
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" s
Displaying 12 items

View Taxonomy