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13_2_20cm_scaffold_1079

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1079_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..456)
DNA (456bp) protein (152aa)
proton-translocating NADH-quinone oxidoreductase subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I, chain 6) (NDH-1, chain 6) id=3051773 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proton-translocating NADH-quinone oxidoreductase subunit J
13_2_20cm_scaffold_1079_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(453..1001)
DNA (549bp) protein (183aa)
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
nuoI; NADH-quinone oxidoreductase subunit I (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=14626927 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nuoI; NADH dehydrogenase subunit I
13_2_20cm_scaffold_1079_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(991..1986)
DNA (996bp) protein (332aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit H id=4149417 bin=GWC2_Methylomirabilis_70_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
respiratory-chain NADH dehydrogenase subunit 1
13_2_20cm_scaffold_1079_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1983..3143)
DNA (1161bp) protein (387aa)
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH dehydrogenase I, D subunit (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D id=3051782 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1079_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3150..3785)
DNA (636bp) protein (212aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3051785 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_1079_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(3810..4262)
DNA (453bp) protein (151aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14626931 bin=bin7_NC10_sister species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C
13_2_20cm_scaffold_1079_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4270..4905)
DNA (636bp) protein (212aa)
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD; NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) (EC:1.6.5.3) id=14626932 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10 rbh
nuoB; NADH dehydrogenase I subunit B
13_2_20cm_scaffold_1079_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(4896..5249)
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_2_20cm_scaffold_1079_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5488..6045
DNA (558bp) protein (186aa)
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_scaffold_1079_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6083..6784
DNA (702bp) protein (234aa)
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sigma-54 factor interaction domain-containing protein id=2883274 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, fis family transcriptional regulator
13_2_20cm_scaffold_1079_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6759..8303)
DNA (1545bp) protein (515aa)
pyruvate/ketoisovalerate oxidoreductase; K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] id=14426171 bin=bin1_lowGC species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP rbh
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit
13_2_20cm_scaffold_1079_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8300..10438)
DNA (2139bp) protein (713aa)
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_2_20cm_scaffold_1079_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11284..13380
DNA (2097bp) protein (699aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
13_2_20cm_scaffold_1079_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13334..14152)
DNA (819bp) protein (273aa)
Glycosyl transferase 2 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase family 2
13_2_20cm_scaffold_1079_15
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(14157..15458)
DNA (1302bp) protein (434aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q112T5_TRIEI rbh
DegT/DnrJ/EryC1/StrS aminotransferase; K12452 CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
DegT/DnrJ/EryC1/StrS aminotransferase
13_2_20cm_scaffold_1079_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(15458..15922)
DNA (465bp) protein (155aa)
dTDP-4-dehydrorhamnose 35-epimerase-like protein (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme {ECO:0000313|EMBL:AEP13774.1}; EC=5.1.3.13 {ECO:0000313|EMBL:AEP13774.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLH8_CHLTF
13_2_20cm_scaffold_1079_17
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(15919..16905)
DNA (987bp) protein (329aa)
CDP-glucose 4,6-dehydratase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1F1_CALAS
rfbG; CDP-glucose 4,6-dehydratase
CDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:BAL99088.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain D
13_2_20cm_scaffold_1079_18
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(16895..17683)
DNA (789bp) protein (263aa)
glucose-1-phosphate cytidylyltransferase; K00978 glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] Tax=RBG_13_WOR_2_41_10_curated
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33); K00978 glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] id=14429848 bin=bin3_NC10 species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10 rbh
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33)
13_2_20cm_scaffold_1079_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17724..18443)
DNA (720bp) protein (240aa)
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter-like protein
13_2_20cm_scaffold_1079_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18443..19087)
DNA (645bp) protein (215aa)
type 12 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 12 id=1906302 bin=GWA2_Methylomirabilis_73_35 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 12 methyltransferase
13_2_20cm_scaffold_1079_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19065..19832)
DNA (768bp) protein (256aa)
Putative uncharacterized protein id=1906301 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
Displaying 21 items

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