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13_2_20cm_scaffold_1126

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1126_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..1488
DNA (1488bp) protein (496aa)
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4226580 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_2_20cm_scaffold_1126_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1481..3262
DNA (1782bp) protein (594aa)
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4889338 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
ABC transporter ATP-binding protein/membrane protein
13_2_20cm_scaffold_1126_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3259..3612
DNA (354bp) protein (118aa)
6-O-methylguanine DNA methyltransferase; K07443 methylated-DNA-protein-cysteine methyltransferase related protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MGMT family protein id=2720990 bin=GWA2_Methylomirabilis_73_35 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1126_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3609..4634
DNA (1026bp) protein (342aa)
putative F420-dependent oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative F420-dependent oxidoreductase id=2720989 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative F420-dependent oxidoreductase
13_2_20cm_scaffold_1126_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4689..5450
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=GWA2_Rokubacteria_73_35_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=4226449 bin=GWF2_Methylomirabilis_70_14 species=Halobacterium sp. DL1 genus=Halobacterium taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_2_20cm_scaffold_1126_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5455..6378
DNA (924bp) protein (308aa)
hypothetical protein; K07022 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K07022 id=14626145 bin=bin7_NC10_sister species=Pyrococcus yayanosii genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_1126_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6378..6524
DNA (147bp) protein (49aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4810583 bin=GWC2_Methylomirabilis_70_16 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1126_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6534..6845
DNA (312bp) protein (104aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4889331 bin=GWC2_Methylomirabilis_70_24 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
thiol-specific antioxidant protein
13_2_20cm_scaffold_1126_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6879..7793)
DNA (915bp) protein (305aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative permease, DMT superfamily id=2720985 bin=GWA2_Methylomirabilis_73_35 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Drug/metabolite transporter (DMT) permease
13_2_20cm_scaffold_1126_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7862..8332
DNA (471bp) protein (157aa)
cyclase/dehydrase id=14626141 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cyclase/dehydrase Tax=CSP1_6_Rokubacteria
cyclase/dehydrase
13_2_20cm_scaffold_1126_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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8358..9305
DNA (948bp) protein (316aa)
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] id=14626140 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=CSP1_6_Rokubacteria
apurinic endonuclease Apn1 (EC:3.1.21.2)
13_2_20cm_scaffold_1126_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9289..9867)
DNA (579bp) protein (193aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endonuclease III id=2720983 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Endonuclease III
13_2_20cm_scaffold_1126_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9933..10649)
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2720981 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 13 items

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