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13_2_20cm_scaffold_1240

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1240_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

340..2013
DNA (1674bp) protein (558aa)
Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase Melittin resistance protein PqaB Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase family 39 id=4362520 bin=GWC2_Geobacteraceae_55_20 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
glycosyl transferase family protein
13_2_20cm_scaffold_1240_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2070..2807
DNA (738bp) protein (246aa)
Glycosyltransferase id=2319272 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
family 2 glycosyl transferase
13_2_20cm_scaffold_1240_3
R_OP3X_45_10, OP3X, Bacteria

Not on your lists

2971..4326
DNA (1356bp) protein (452aa)
asparagine synthase Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
Asparagine synthetase id=4910837 bin=GWC2_Planctomycete_KSU_39_26 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
asparagine synthase
13_2_20cm_scaffold_1240_4
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

4316..4819
DNA (504bp) protein (168aa)
asparagine synthase Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
Asparagine synthetase id=1824286 bin=GWD2_Deltaproteobacteria_55_8 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
asparagine synthase
13_2_20cm_scaffold_1240_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5015..6655
DNA (1641bp) protein (547aa)
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphomethylpyrimidine synthase id=3222446 bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiamine biosynthesis protein ThiC
13_2_20cm_scaffold_1240_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6660..6983)
DNA (324bp) protein (108aa)
Two component transcriptional regulator id=4905366 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
sigma-54 dependent transcriptional regulator
13_2_20cm_scaffold_1240_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7241..7525)
DNA (285bp) protein (95aa)
N-carbamyl-D-amino acid amidohydrolase id=3783377 bin=GWC2_Methylomirabilis_70_24 species=Thauera sp. 28 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
N-carbamyl-D-amino acid amidohydrolase Tax=GWA2_Rokubacteria_70_23_curated
N-carbamoyl-D-amino acid hydrolase
13_2_20cm_scaffold_1240_8
unknown

Not on your lists

7712..8239
DNA (528bp) protein (176aa)

This feature has no annotations

13_2_20cm_scaffold_1240_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8214..9662)
DNA (1449bp) protein (483aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=4507374 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein, family 5 middle family protein 6
13_2_20cm_scaffold_1240_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9659..10828)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EBB12
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20263.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
13_2_20cm_scaffold_1240_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10900..12333)
DNA (1434bp) protein (478aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
13_2_20cm_scaffold_1240_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12333..13409)
DNA (1077bp) protein (359aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
13_2_20cm_scaffold_1240_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(13406..14410)
DNA (1005bp) protein (335aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase, with actin-like ATPase domain (ygjD,gcp)
13_2_20cm_scaffold_1240_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14432..15688)
DNA (1257bp) protein (419aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
13_2_20cm_scaffold_1240_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15702..16898)
DNA (1197bp) protein (399aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=4795609 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_1240_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16895..17779)
DNA (885bp) protein (295aa)
cell division protein FtsX; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Cell division protein FtsX id=4608922 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Cell division protein FtsX
13_2_20cm_scaffold_1240_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17780..18451)
DNA (672bp) protein (224aa)
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell division ATP-binding protein FtsE id=4608921 bin=GWC2_Methylomirabilis_70_24 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division ATP-binding protein FtsE
13_2_20cm_scaffold_1240_18
unknown

Not on your lists

comp(18482..18577)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 18 items

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