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13_2_20cm_scaffold_1558

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1558_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..678)
DNA (678bp) protein (226aa)
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) Tax=GWA2_Rokubacteria_70_23_curated
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component subunit beta id=4688355 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_1558_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(682..1356)
DNA (675bp) protein (225aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component, alpha subunit id=2937426 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1558_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(1367..1624)
DNA (258bp) protein (86aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) id=14627460 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
13_2_20cm_scaffold_1558_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1644..1946)
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=14627461 bin=bin7_NC10_sister species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase subunit K
13_2_20cm_scaffold_1558_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1943..2530)
DNA (588bp) protein (196aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=14627462 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
13_2_20cm_scaffold_1558_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2527..2670)
DNA (144bp) protein (48aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit I id=2937441 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1558_7
unknown

Not on your lists

2829..3110
DNA (282bp) protein (94aa)

This feature has no annotations

13_2_20cm_scaffold_1558_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3014..4102)
DNA (1089bp) protein (363aa)
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=14627536 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3)
13_2_20cm_scaffold_1558_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4099..5670)
DNA (1572bp) protein (524aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin oxidoreductase Fe4S4 region id=14627535 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
Molybdopterin oxidoreductase Fe4S4 region
13_2_20cm_scaffold_1558_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5674..6894)
DNA (1221bp) protein (407aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH dehydrogenase I subunit F id=3990315 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1558_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6891..7394)
DNA (504bp) protein (168aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] id=14627533 bin=bin7_NC10_sister species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
nuoE; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
13_2_20cm_scaffold_1558_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7435..8784)
DNA (1350bp) protein (450aa)
nuoD; NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase subunit D (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D id=2992135 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1558_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8784..9281)
DNA (498bp) protein (166aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH-quinone oxidoreductase subunit C id=2992141 bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH (or F420H2) dehydrogenase subunit C
13_2_20cm_scaffold_1558_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9282..9761)
DNA (480bp) protein (160aa)
nuoB1_[H]; NADH-ubiquinone oxidoreductase chain B (EC:1.6.5.3) Tax=GWA2_Rokubacteria_70_23_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B id=2992145 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1558_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9731..10081)
DNA (351bp) protein (117aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A id=4828151 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1558_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10177..11103)
DNA (927bp) protein (309aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase id=3340664 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_1558_17
unknown

Not on your lists

comp(11228..11506)
DNA (279bp) protein (93aa)

This feature has no annotations

13_2_20cm_scaffold_1558_18
unknown

Not on your lists

comp(11485..11868)
DNA (384bp) protein (128aa)

This feature has no annotations

13_2_20cm_scaffold_1558_19
unknown

Not on your lists

comp(12000..12338)
DNA (339bp) protein (113aa)

This feature has no annotations

13_2_20cm_scaffold_1558_20
unknown

Not on your lists

comp(12655..13458)
DNA (804bp) protein (268aa)

This feature has no annotations

13_2_20cm_scaffold_1558_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13829..14689)
DNA (861bp) protein (287aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide ABC transporter, membrane protein id=4787929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter membrane protein
13_2_20cm_scaffold_1558_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14692..15684)
DNA (993bp) protein (331aa)
Binding-protein-dependent transport systems inner membrane component id=4787931 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_1558_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15709..17364)
DNA (1656bp) protein (552aa)
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Oligopeptide-binding protein id=2992161 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide-binding protein
13_2_20cm_scaffold_1558_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17365..17727)
DNA (363bp) protein (121aa)
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase, SecG subunit id=4787935 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecG
13_2_20cm_scaffold_1558_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17724..18506)
DNA (783bp) protein (261aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Triosephosphate isomerase id=4787937 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
triosephosphate isomerase
13_2_20cm_scaffold_1558_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18506..19690)
DNA (1185bp) protein (395aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase id=4828185 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1558_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19707..20711)
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) id=4787941 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1558_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20758..21501)
DNA (744bp) protein (248aa)
Amidophosphoribosyltransferase, putative id=4787943 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidophosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
amidophosphoribosyltransferase
13_2_20cm_scaffold_1558_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21498..22409)
DNA (912bp) protein (304aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4787945 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1558_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22462..22827)
DNA (366bp) protein (122aa)
transcriptional regulators, TraR/DksA family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulators, TraR/DksA family id=14626910 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulators, TraR/DksA family
Displaying items 1-30 of 40 in total

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