ggKbase home page

13_2_20cm_scaffold_2280

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2280_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27..1202)
DNA (1176bp) protein (392aa)
id=4698146 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4698146 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2280_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1199..1699)
DNA (501bp) protein (167aa)
hypothetical protein id=4429854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_2280_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1792..2103
DNA (312bp) protein (104aa)
id=14625964 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=4698147 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2280_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2256..2774)
DNA (519bp) protein (173aa)
alkylmercury lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Alkylmercury lyase family protein id=4255768 bin=GWC2_Methylomirabilis_70_16 species=Rhodococcus opacus genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Hypothetical protein
13_2_20cm_scaffold_2280_5
unknown

Not on your lists

comp(2795..3070)
DNA (276bp) protein (92aa)

This feature has no annotations

13_2_20cm_scaffold_2280_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3084..3296)
DNA (213bp) protein (71aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_scaffold_2280_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3289..3585)
DNA (297bp) protein (99aa)
hypothetical protein id=5002882 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
13_2_20cm_scaffold_2280_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4138..5229)
DNA (1092bp) protein (364aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidinol-phosphate aminotransferase
13_2_20cm_scaffold_2280_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5299..7971
DNA (2673bp) protein (891aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uridylyltransferase id=4762294 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
13_2_20cm_scaffold_2280_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7985..10657
DNA (2673bp) protein (891aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative soluble lytic murein transglycosylase
13_2_20cm_scaffold_2280_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10673..11356)
DNA (684bp) protein (228aa)
Aminotransferase, class I and II Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4698167 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2280_12
unknown

Not on your lists

comp(11456..11878)
DNA (423bp) protein (141aa)

This feature has no annotations

Displaying 12 items

View Taxonomy