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13_2_20cm_scaffold_2943

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2943_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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1..1269
DNA (1269bp) protein (423aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K03885 NADH dehydrogenase [EC:1.6.99.3] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
NADH dehydrogenase (Ubiquinone) n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CF05_THET1
13_2_20cm_scaffold_2943_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1266..1877
DNA (612bp) protein (204aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=GWA2_Rokubacteria_73_35_curated
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase, folate-dependent id=4153845 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2943_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1874..3049
DNA (1176bp) protein (392aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydro
Bifunctional purine biosynthesis protein PurH id=3389040 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase
13_2_20cm_scaffold_2943_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3019..3450
DNA (432bp) protein (144aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydro
Bifunctional purine biosynthesis protein PurH id=1817198 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
13_2_20cm_scaffold_2943_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3553..4458
DNA (906bp) protein (302aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Tetratricopeptide TPR_2 repeat protein id=3877307 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2943_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4455..5726
DNA (1272bp) protein (424aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosylamine/glycine ligase (EC:4.1.1.21 6.3.4.13)
Phosphoribosylamine--glycine ligase id=3389045 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_2943_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5698..6243
DNA (546bp) protein (182aa)
hypothetical protein; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSV9_9FIRM
hypothetical protein
13_2_20cm_scaffold_2943_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6337..6876
DNA (540bp) protein (180aa)
translation factor; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=GWC2_Rokubacteria_70_16_curated
Putative translation factor id=4153920 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
translation factor SUA5
13_2_20cm_scaffold_2943_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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6966..7562
DNA (597bp) protein (199aa)
molybdopterin-guanine dinucleotide biosynthesis protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor guanylyltransferase id=4621961 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein FdhD
13_2_20cm_scaffold_2943_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7562..8356
DNA (795bp) protein (265aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=3877311 bin=GWF2_Methylomirabilis_70_14 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_2943_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8363..9568
DNA (1206bp) protein (402aa)
thiI; thiamine biosynthesis protein thiI Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Probable tRNA sulfurtransferase id=4621862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiI; thiamine biosynthesis protein thiI
13_2_20cm_scaffold_2943_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9565..9807
DNA (243bp) protein (81aa)
Putative exonuclease of the beta-lactamase fold involved in RNA processing id=4621859 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. GM17 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
beta-lactamase domain-containing protein
13_2_20cm_scaffold_2943_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9816..10883
DNA (1068bp) protein (356aa)
beta-lactamase; K07576 metallo-beta-lactamase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative exonuclease of the beta-lactamase fold involved in RNA processing id=4153929 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_2943_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10900..11634
DNA (735bp) protein (245aa)
glucosamine/galactosamine-6-phosphate isomerase (EC:3.5.99.6); K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glucosamine-6-phosphate isomerase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] id=14626778 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
glucosamine-6-phosphate isomerase
13_2_20cm_scaffold_2943_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11697..12155
DNA (459bp) protein (153aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=GWA2_Rokubacteria_73_35_curated
Sugar-phosphate isomerase, RpiB/LacA/LacB family id=4621857 bin=GWA2_Methylomirabilis_73_35 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribose 5-phosphate isomerase B
13_2_20cm_scaffold_2943_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12139..13386
DNA (1248bp) protein (416aa)
glyA; Serine hydroxymethyltransferase (glyA) (EC:2.1.2.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Serine hydroxymethyltransferase id=4621854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glyA; serine hydroxymethyltransferase
13_2_20cm_scaffold_2943_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13400..13918
DNA (519bp) protein (173aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Transcriptional repressor NrdR id=3366426 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nrdR; transcriptional regulator NrdR
13_2_20cm_scaffold_2943_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

14300..16117
DNA (1818bp) protein (606aa)
cobalamin B12-binding/Radical SAM family protein id=14627517 bin=bin7_NC10_sister species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding/Radical SAM family protein Tax=CSP1_6_Rokubacteria
cobalamin B12-binding/Radical SAM family
13_2_20cm_scaffold_2943_19
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16276..16713)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WUD4_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW12355.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (stra
13_2_20cm_scaffold_2943_20
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16655..16966)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037D9673
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
hypothetical protein
13_2_20cm_scaffold_2943_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(17086..17772)
DNA (687bp) protein (229aa)
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10)
Putative Orotate phosphoribosyltransferase (OPRT) (OPRTase) id=3366422 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_2943_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17961..18518
DNA (558bp) protein (186aa)
peptidase M22, glycoprotease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M22, glycoprotease id=14627521 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M22, glycoprotease
13_2_20cm_scaffold_2943_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18499..18996
DNA (498bp) protein (166aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal-protein-alanine acetyltransferase id=3366418 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ribosomal-protein-alanine acetyltransferase
13_2_20cm_scaffold_2943_24
R_NC10_66_22, NC10, Bacteria

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19020..19892
DNA (873bp) protein (291aa)
cytochrome c n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002893947
diheme cytochrome C-type Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
cytochrome c
13_2_20cm_scaffold_2943_25
R_NC10_66_22, NC10, Bacteria

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19953..20447
DNA (495bp) protein (165aa)
Cytochrome c, class II n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMV7_9PROT
cytochrome C Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
cytochrome C
13_2_20cm_scaffold_2943_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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20518..20838
DNA (321bp) protein (107aa)
id=14626551 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
Displaying 26 items

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