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13_2_20cm_scaffold_435

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_435_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..2653
DNA (2652bp) protein (884aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
13_2_20cm_scaffold_435_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2646..3500
DNA (855bp) protein (285aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=4815544 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_435_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3497..4069
DNA (573bp) protein (191aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase id=4815545 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_435_4
Thermodesulfobium narugense, Thermodesulfobium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4082..4435)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:AEE14500.1}; Flags: Precursor;; TaxID=747365 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermodesulfobiaceae; Thermodesulfobium.;" sou
13_2_20cm_scaffold_435_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4470..4901)
DNA (432bp) protein (144aa)
id=14627512 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_435_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5016..5720)
DNA (705bp) protein (235aa)
id=14627512 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_435_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5843..6148)
DNA (306bp) protein (102aa)
Cupin n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W158_9EURY
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cupin 2 conserved barrel domain protein
13_2_20cm_scaffold_435_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6226..6858)
DNA (633bp) protein (211aa)
OmpA/MotB domain protein id=1746151 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
OmpA/MotB domain-containing protein
13_2_20cm_scaffold_435_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7052..7414)
DNA (363bp) protein (121aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_scaffold_435_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7411..8226)
DNA (816bp) protein (272aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02050 NitT/TauT family transport system permease protein id=14625185 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_435_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8223..8945)
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein id=4205667 bin=GWC2_Methylomirabilis_70_24 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter ATP-binding protein
13_2_20cm_scaffold_435_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9008..10078)
DNA (1071bp) protein (357aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625187 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_435_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10277..12877
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUT1_SORCE rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36101.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_2_20cm_scaffold_435_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12949..13833
DNA (885bp) protein (295aa)
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_435_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13953..14114
DNA (162bp) protein (54aa)
UPF0296 protein GT20_2421 id=3315424 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K09777 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_435_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14107..14736
DNA (630bp) protein (210aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gmk; guanylate kinase
13_2_20cm_scaffold_435_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14736..14948
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit omega Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-directed RNA polymerase subunit omega
13_2_20cm_scaffold_435_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15556..16131
DNA (576bp) protein (192aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=RIFCS
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
13_2_20cm_scaffold_435_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16209..16817
DNA (609bp) protein (203aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3315415 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_435_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16819..18630
DNA (1812bp) protein (604aa)
primosomal protein N; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Primosomal protein N' id=3315413 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
priA; primosomal protein N'
13_2_20cm_scaffold_435_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18618..19142
DNA (525bp) protein (175aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide deformylase id=3772755 bin=GWC2_Methylomirabilis_70_16 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide deformylase
13_2_20cm_scaffold_435_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19226..20071
DNA (846bp) protein (282aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_435_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20068..20529
DNA (462bp) protein (154aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] id=14625196 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
sun protein
Displaying 23 items

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