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13_2_20cm_scaffold_561

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_561_1
unknown

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comp(2..100)
DNA (99bp) protein (33aa)

This feature has no annotations

13_2_20cm_scaffold_561_2
unknown

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comp(97..273)
DNA (177bp) protein (59aa)

This feature has no annotations

13_2_20cm_scaffold_561_3
Treponema paraluiscuniculi, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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623..973
DNA (351bp) protein (117aa)
Possible dnaK suppressor n=10 Tax=Treponema RepID=B2S244_TREPS
dksA; putative DnaK suppressor protein
Probable DnaK suppressor protein {ECO:0000313|EMBL:AEH40052.1}; TaxID=545776 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema paraluiscuniculi (strain C
13_2_20cm_scaffold_561_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

994..1311
DNA (318bp) protein (106aa)
transporter n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000362E8C6
transport-associated protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
lipoprotein
13_2_20cm_scaffold_561_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

1503..1997
DNA (495bp) protein (165aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent
Putative response regulator in two-component regulatory system, sigma 54-dependent {ECO:0000313|EMBL:CBE68926.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;
13_2_20cm_scaffold_561_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

1994..2752
DNA (759bp) protein (253aa)
Putative response regulator in two-component regulatory system, sigma 54-dependent n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGP5_9BACT
response regulator in two-component regulatory system, sigma 54-dependent Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
response regulator in two-component regulatory system, sigma 54-dependent
13_2_20cm_scaffold_561_7
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

2752..3414
DNA (663bp) protein (221aa)
Multi-sensor signal transduction histidine kinase id=4034844 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
sensory box histidine kinase Tax=GWC2_Nitrospirae_57_13_curated
sensory histidine kinase CreC
13_2_20cm_scaffold_561_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3395..3910)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000380F068
Peptidase M50 {ECO:0000313|EMBL:ETK31509.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
peptidase M50
13_2_20cm_scaffold_561_9
unknown

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comp(3907..4173)
DNA (267bp) protein (89aa)

This feature has no annotations

13_2_20cm_scaffold_561_10
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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comp(4184..5056)
DNA (873bp) protein (291aa)
putative mannose-1-phosphate guanylyltransferase (EC:2.7.7.22) Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Nucleotidyl transferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPT1_OPITP
nucleotidyl transferase
13_2_20cm_scaffold_561_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5213..5971
DNA (759bp) protein (253aa)
short-chain dehydrogenase/reductase sdr; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125)
2-deoxy-D-gluconate 3-dehydrogenase id=4472645 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_561_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5972..7555
DNA (1584bp) protein (528aa)
serA-2; D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-3-phosphoglycerate dehydrogenase id=3870380 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
3-phosphoglycerate dehydrogenase
13_2_20cm_scaffold_561_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7613..8026
DNA (414bp) protein (138aa)
lipoprotein
putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipoprotein id=3089751 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_561_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8335..9825)
DNA (1491bp) protein (497aa)
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] id=14625649 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
13_2_20cm_scaffold_561_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9809..10702)
DNA (894bp) protein (298aa)
gnd; 6-phosphogluconate dehydrogenase (EC:1.1.1.44); K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gnd; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase (Decarboxylating) id=3814766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_561_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10754..11500)
DNA (747bp) protein (249aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-phosphogluconolactonase (6PGL) id=3814683 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
6-phosphogluconolactonase
13_2_20cm_scaffold_561_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11518..12963)
DNA (1446bp) protein (482aa)
carbohydrate kinase FGGY; K00851 gluconokinase [EC:2.7.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carbohydrate kinase; K00851 gluconokinase [EC:2.7.1.12] id=14627818 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
carbohydrate kinase FGGY
13_2_20cm_scaffold_561_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12993..13211
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3814680 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_561_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13234..13521
DNA (288bp) protein (96aa)
selenoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
selenoprotein id=4365896 bin=GWC2_Methylomirabilis_70_24 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
selenoprotein
13_2_20cm_scaffold_561_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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13561..13764
DNA (204bp) protein (68aa)
Uncharacterized protein id=3814676 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_561_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13761..14798
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4282852 bin=GWC2_Methylomirabilis_70_16 species=Natrialba asiatica genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_561_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14870..15769)
DNA (900bp) protein (300aa)
membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane protein, putative id=3660581 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_561_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15796..16200
DNA (405bp) protein (135aa)
Phenylacetic acid degradation-related protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215N0_RHOPB
phenylacetic acid degradation-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation-like protein
13_2_20cm_scaffold_561_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16328..17230
DNA (903bp) protein (301aa)
mmsB; 3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3261976 bin=GWA2_Methylomirabilis_73_35 species=Rhipicephalus pulchellus genus=Rhipicephalus taxon_order=Ixodida taxon_class=Arachnida phylum=Arthropoda tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyisobutyrate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_561_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17276..17593
DNA (318bp) protein (106aa)
GYD domain superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GYD domain superfamily id=4895583 bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GYD domain superfamily
13_2_20cm_scaffold_561_26
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

17590..17775
DNA (186bp) protein (62aa)
4Fe-4S ferredoxin Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase id=14626791 bin=bin7_NC10_sister species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase
Displaying 26 items

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