ggKbase home page

13_2_20cm_scaffold_643

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_643_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..596)
DNA (594bp) protein (198aa)
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter, ATP-binding protein id=3960160 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein
13_2_20cm_scaffold_643_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(587..1285)
DNA (699bp) protein (233aa)
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit id=3960241 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/sulfonate/bicarbonate ABC transporter permease
13_2_20cm_scaffold_643_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1332..1724)
DNA (393bp) protein (131aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
quaternary amine uptake ABC transporter substrate-binding protein
13_2_20cm_scaffold_643_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1796..2248)
DNA (453bp) protein (151aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_643_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2245..3624)
DNA (1380bp) protein (460aa)
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] id=14627587 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
pyridoxal-phosphate dependent TrpB-like enzyme
13_2_20cm_scaffold_643_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3678..4844
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3960244 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_643_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4919..5374
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=4677000 bin=GWF2_Methylomirabilis_70_14 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_643_8
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5449..6477
DNA (1029bp) protein (343aa)
Kelch repeat-containing protein Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
13_2_20cm_scaffold_643_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6481..7017)
DNA (537bp) protein (179aa)
YCII-related id=3269626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YciI-like protein; K09780 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
YciI
13_2_20cm_scaffold_643_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7068..9665
DNA (2598bp) protein (866aa)
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
helicase Tax=GWC2_Rokubacteria_70_16_curated
helicase
13_2_20cm_scaffold_643_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9705..10184
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269477 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_643_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10208..10327
DNA (120bp) protein (40aa)
id=14627246 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14627246 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_643_13
unknown

Not on your lists

comp(10465..10716)
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_643_14
unknown

Not on your lists

comp(10828..11112)
DNA (285bp) protein (95aa)

This feature has no annotations

13_2_20cm_scaffold_643_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11179..11490
DNA (312bp) protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269471 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_643_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11487..12182
DNA (696bp) protein (232aa)
methyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methylase id=3269468 bin=GWA2_Methylomirabilis_73_35 species=Methanothermobacter marburgensis genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
13_2_20cm_scaffold_643_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12179..12922
DNA (744bp) protein (248aa)
YdjC-like protein id=3269465 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YdjC-like protein; K03478 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_643_18
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12924..13358
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJV3_XANP2
hypothetical protein Tax=GWC1_Azotobacter_66_9_curated
Hypothetical protein
13_2_20cm_scaffold_643_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13360..14358
DNA (999bp) protein (333aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional repressor; K00845 glucokinase [EC:2.7.1.2] id=14627250 bin=bin7_NC10_sister species=Shinella zoogloeoides genus=Shinella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ROK family protein
13_2_20cm_scaffold_643_20
unknown

Not on your lists

14355..14495
DNA (141bp) protein (47aa)

This feature has no annotations

13_2_20cm_scaffold_643_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14447..15058
DNA (612bp) protein (204aa)
Alcohol dehydrogenase GroES domain protein id=3824564 bin=GWC2_Methylomirabilis_70_16 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
alcohol dehydrogenase GroES domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
alcohol dehydrogenase GroES domain-containing protein
13_2_20cm_scaffold_643_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

15611..16351
DNA (741bp) protein (247aa)
Natural resistance-associated macrophage protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SI9_SOLUE
natural resistance-associated macrophage protein
Natural resistance-associated macrophage protein {ECO:0000313|EMBL:ABJ87381.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
13_2_20cm_scaffold_643_23
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(16367..17776)
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036D1A38 rbh
two-component, sigma-54 specific, transcriptional regulator, Fis family Tax=RBG_16_NC10_65_8_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_2_20cm_scaffold_643_24
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(17773..19155)
DNA (1383bp) protein (461aa)
histidine kinase Tax=RBG_16_NC10_65_8_curated
sensor histidine kinase id=14626555 bin=bin7_NC10_sister species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
histidine kinase
Displaying 24 items

View Taxonomy