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13_2_20cm_scaffold_718

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_718_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..1414)
DNA (1413bp) protein (471aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATPase AAA-2 domain protein id=2875189 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATPase AAA
13_2_20cm_scaffold_718_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1582..2271)
DNA (690bp) protein (230aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] id=14627198 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
ABC transporter-like protein
13_2_20cm_scaffold_718_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2264..3496)
DNA (1233bp) protein (411aa)
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family id=14627199 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
13_2_20cm_scaffold_718_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3493..4983)
DNA (1491bp) protein (497aa)
lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase id=4000090 bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_718_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4980..5969)
DNA (990bp) protein (330aa)
hypothetical protein; K02836 peptide chain release factor 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide chain release factor 2 id=4041879 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide chain release factor 2
13_2_20cm_scaffold_718_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6084..7550)
DNA (1467bp) protein (489aa)
lnt-1; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Apolipoprotein N-acyltransferase id=4041878 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lnt-1; apolipoprotein N-acyltransferase
13_2_20cm_scaffold_718_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7607..8332)
DNA (726bp) protein (242aa)
phosphatase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metallophosphoesterase id=4041877 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metallophosphoesterase
13_2_20cm_scaffold_718_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8342..8758)
DNA (417bp) protein (139aa)
nusB; N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N utilization substance protein B homolog id=4041876 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusB antitermination factor
13_2_20cm_scaffold_718_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8751..9248)
DNA (498bp) protein (166aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWA2_Rokubacteria_73_35_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=4041875 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_718_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9250..10458)
DNA (1209bp) protein (403aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cura
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA id=2874915 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_718_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10455..11036)
DNA (582bp) protein (194aa)
RibC; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
riboflavin synthase (EC:2.5.1.9)
riboflavin synthase subunit alpha id=2874912 bin=GWC2_Methylomirabilis_70_16 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_718_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11036..12145)
DNA (1110bp) protein (370aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD id=4253324 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_718_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12142..13068)
DNA (927bp) protein (309aa)
ftsY; signal recognition particle-docking protein ftsy; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle receptor FtsY id=4253322 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsY; signal recognition particle-docking protein ftsy
13_2_20cm_scaffold_718_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13065..14030)
DNA (966bp) protein (322aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4253320 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_718_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14063..17617)
DNA (3555bp) protein (1185aa)
condensin subunit Smc; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partition protein Smc id=2874900 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
chromosome segregation protein SMC
13_2_20cm_scaffold_718_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17712..20510)
DNA (2799bp) protein (933aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=14627675 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; preprotein translocase subunit SecA
13_2_20cm_scaffold_718_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20548..22215)
DNA (1668bp) protein (556aa)
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair and genetic recombination protein; K03631 DNA repair protein RecN (Recombination protein N) Tax=GWA2_Rokubacteria_73_35_curated
recN; DNA repair and genetic recombination protein
13_2_20cm_scaffold_718_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22285..23142)
DNA (858bp) protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=GWA2_Rokubacteria_73_35_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_718_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23157..23867)
DNA (711bp) protein (237aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=14627678 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hemolysin A
13_2_20cm_scaffold_718_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(23905..24615)
DNA (711bp) protein (237aa)
peptidase, S54 (Rhomboid) family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative peptidase, S54 (Rhomboid) family id=2874876 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
peptidase, S54 (Rhomboid) family
13_2_20cm_scaffold_718_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24612..25907)
DNA (1296bp) protein (432aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
M16 family peptidase
13_2_20cm_scaffold_718_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25904..27244)
DNA (1341bp) protein (447aa)
M16 family peptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
M16 family peptidase (EC:3.4.24.-)
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_718_23
unknown

Not on your lists

comp(27515..27688)
DNA (174bp) protein (58aa)

This feature has no annotations

13_2_20cm_scaffold_718_24
unknown

Not on your lists

28163..28297
DNA (135bp) protein (45aa)

This feature has no annotations

13_2_20cm_scaffold_718_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28403..29734
DNA (1332bp) protein (444aa)
peptidase S46 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic serine proteinase
13_2_20cm_scaffold_718_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(29866..30213)
DNA (348bp) protein (116aa)
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWA2_Rokubacteria_73_35_curated
histidine triad (HIT) protein
13_2_20cm_scaffold_718_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(30483..31109)
DNA (627bp) protein (209aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7J9_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical membrane protein
13_2_20cm_scaffold_718_28
unknown

Not on your lists

comp(31443..31880)
DNA (438bp) protein (146aa)

This feature has no annotations

13_2_20cm_scaffold_718_29
unknown

Not on your lists

32020..32217
DNA (198bp) protein (66aa)

This feature has no annotations

13_2_20cm_scaffold_718_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(32528..33322)
DNA (795bp) protein (265aa)
Uncharacterized protein id=2586442 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
Displaying items 1-30 of 42 in total

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