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13_2_20cm_scaffold_906

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_906_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3..1154)
DNA (1152bp) protein (384aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=14626956 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=CSP1_6_Rokubacteria
DNA ligase D
13_2_20cm_scaffold_906_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1223..2101
DNA (879bp) protein (293aa)
Ku family containing protein; K10979 DNA end-binding protein Ku id=14626955 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Ku family containing protein
13_2_20cm_scaffold_906_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2104..2661
DNA (558bp) protein (186aa)
signal peptidase I (EC:3.4.21.89)
lepB; signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] Tax=GWC2_Rokubacteria_70_16_curated
Signal peptidase I id=3102374 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_906_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2792..3541
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRS7_9PROT
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:EDP64611.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
13_2_20cm_scaffold_906_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3696..4496
DNA (801bp) protein (267aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120A0_POLSJ
13_2_20cm_scaffold_906_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4563..5708
DNA (1146bp) protein (382aa)
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=14625979 bin=bin7_NC10_sister species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=CSP1_6_Rokubacteria
pyruvate dehydrogenase
13_2_20cm_scaffold_906_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5696..6676
DNA (981bp) protein (327aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=14625978 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=CSP1_6_Rokubacteria
transketolase, central region
13_2_20cm_scaffold_906_8
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

6771..7580
DNA (810bp) protein (270aa)
Tax=RBG_16_NC10_65_8_curated
13_2_20cm_scaffold_906_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7577..8908
DNA (1332bp) protein (444aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=3735755 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
dehydrogenase catalytic domain-containing protein
13_2_20cm_scaffold_906_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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9036..10412
DNA (1377bp) protein (459aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] id=14625975 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=CSP1_6_Rokubacteria
pyruvate dehydrogenase E3 component
13_2_20cm_scaffold_906_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10422..11993
DNA (1572bp) protein (524aa)
Sulfurtransferase id=2642979 bin=GWF2_Methylomirabilis_70_14 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rhodanese-like protein Tax=GWA2_Rokubacteria_70_23_curated
rhodanese domain-containing protein
13_2_20cm_scaffold_906_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11990..12679
DNA (690bp) protein (230aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=GWC2_Rokubacteria_70_16_curated
Sulfurtransferase id=2937757 bin=GWC2_Methylomirabilis_70_16 species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rhodanese-related sulfurtransferase
13_2_20cm_scaffold_906_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12823..13383
DNA (561bp) protein (187aa)
cysteine dioxygenase type I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cysteine dioxygenase type I id=2213479 bin=GWA2_Methylomirabilis_73_35 species=Bacillus megaterium genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysteine dioxygenase type I
13_2_20cm_scaffold_906_14
unknown

Not on your lists

13483..13677
DNA (195bp) protein (65aa)

This feature has no annotations

13_2_20cm_scaffold_906_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13818..14819)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Bacillus cereus R309803 RepID=C2QB06_BACCE rbh
luciferase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
luciferase family protein
13_2_20cm_scaffold_906_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14819..15622)
DNA (804bp) protein (268aa)
hpd; 4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] Tax=GWA2_Rokubacteria_73_35_curated
putative 4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27)
UPI0002971993 related cluster id=1866141 bin=GWA2_Methylomirabilis_73_35 species=Thermus oshimai genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_906_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15762..16901)
DNA (1140bp) protein (380aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multidrug-efflux transporter id=4930049 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_906_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16993..18435)
DNA (1443bp) protein (481aa)
AMP-dependent synthetase and ligase id=2213452 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase
13_2_20cm_scaffold_906_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18520..19605)
DNA (1086bp) protein (362aa)
FMN-dependent alpha-hydroxy acid dehydrogenase glycolate oxidase (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; Glycolate oxidase id=3831002 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein
13_2_20cm_scaffold_906_20
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(19641..20129)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1APY5_PELPD
hypothetical protein; K09793 hypothetical protein Tax=RBG_16_NC10_65_8_curated
hypothetical protein
13_2_20cm_scaffold_906_21
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20130..20783)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UN11_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC48927.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_2_20cm_scaffold_906_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21000..22244
DNA (1245bp) protein (415aa)
3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-isopropylmalate dehydratase large subunit id=2937753 bin=GWC2_Methylomirabilis_70_16 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-isopropylmalate dehydratase, large subunit
13_2_20cm_scaffold_906_23
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22281..24272
DNA (1992bp) protein (664aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XG21_9CHRO
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:AKF10101.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.
13_2_20cm_scaffold_906_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24283..24636
DNA (354bp) protein (118aa)
leuD; alpha-IPM isomerase; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-isopropylmalate dehydratase small subunit id=2642972 bin=GWF2_Methylomirabilis_70_14 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-isopropylmalate dehydratase small subunit
Displaying 24 items

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