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13_1_40cm_scaffold_4001

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4001_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..170
DNA (168bp) protein (56aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=3503975 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4001_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

874..1251
DNA (378bp) protein (126aa)
stage V sporulation protein E; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Stage V sporulation protein E id=4599630 bin=GWC2_Methylomirabilis_70_16 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
stage V sporulation protein E
13_1_40cm_scaffold_4001_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1244..2644
DNA (1401bp) protein (467aa)
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=14625504 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
murC; UDP-N-acetylmuramate--L-alanine ligase
13_1_40cm_scaffold_4001_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2638..3516
DNA (879bp) protein (293aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase id=4191405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4001_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3516..4361
DNA (846bp) protein (282aa)
polypeptide-transport-associated domain-containing protein; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polypeptide-transport-associated domain protein FtsQ-type id=4191404 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polypeptide-transport-associated domain-containing protein
13_1_40cm_scaffold_4001_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4361..5605
DNA (1245bp) protein (415aa)
cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division protein ftsA id=4191403 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsA; cell division protein FtsA
13_1_40cm_scaffold_4001_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5709..6866
DNA (1158bp) protein (386aa)
Cell division protein FtsZ id=4191402 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsZ; cell division protein ftsZ Tax=GWA2_Rokubacteria_73_35_curated
ftsZ; cell division protein ftsZ
13_1_40cm_scaffold_4001_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7896..8375
DNA (480bp) protein (160aa)
hypothetical protein; K06997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3884457 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alanine racemase domain-containing protein
13_1_40cm_scaffold_4001_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8372..9193
DNA (822bp) protein (274aa)
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase id=4599706 bin=GWC2_Methylomirabilis_70_16 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_4001_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9198..9434
DNA (237bp) protein (79aa)
Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU56_SYNAS
hypothetical protein; K02221 YggT family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_4001_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9451..9924
DNA (474bp) protein (158aa)
hypothetical protein; K04074 cell division initiation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cell-division initiation protein; K04074 cell division initiation protein id=14625493 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cell division protein DivIVA
13_1_40cm_scaffold_4001_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9896..10183
DNA (288bp) protein (96aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4599709 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_4001_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10180..11220
DNA (1041bp) protein (347aa)
methylthioribose-1-phosphate isomerase (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase id=3779777 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4001_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11264..12850
DNA (1587bp) protein (529aa)
SagB-type dehydrogenase domain protein id=3779776 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SagB-type dehydrogenase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_4001_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12847..13989
DNA (1143bp) protein (381aa)
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45) Tax=GWA2_Rokubacteria_73_35_curated
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45)
Serine-glyoxylate aminotransferase id=3779775 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4001_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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13986..15104
DNA (1119bp) protein (373aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ETW96118.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. T
D-3-phosphoglycerate dehydrogenase id=4925205 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Displaying 16 items

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