ggKbase home page

13_1_40cm_scaffold_5331

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5331_1
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..499
DNA (498bp) protein (166aa)
UPI0003CFFFEE related cluster n=1 Tax=unknown RepID=UPI0003CFFFEE
Uncharacterized protein {ECO:0000313|EMBL:ESZ43578.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
electron transport protein SCO1/SenC
13_1_40cm_scaffold_5331_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

496..2004
DNA (1509bp) protein (503aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" sourc
Histidine kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y592_LEPCP
13_1_40cm_scaffold_5331_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1989..2363
DNA (375bp) protein (125aa)
response regulator receiver protein; K11443 two-component system, cell cycle response regulator DivK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver protein id=3112750 bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver protein
13_1_40cm_scaffold_5331_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3274..4272)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037D6503
ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_5331_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4269..5246)
DNA (978bp) protein (326aa)
Oligopeptide ABC transporter ATP-binding protein id=4621968 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_scaffold_5331_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5243..6127)
DNA (885bp) protein (295aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2951; ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dppC4; dipeptide transport system permease DppC
13_1_40cm_scaffold_5331_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6124..7044)
DNA (921bp) protein (307aa)
nickel-transporting ATPase (EC:3.6.3.24); K02033 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease id=4621966 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_scaffold_5331_8

Not on your lists

comp(7136..8692)
DNA (1557bp) protein (519aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_scaffold_5331_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8771..9121)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q056_9DELT
Helix-hairpin-helix motif protein {ECO:0000313|EMBL:GAM10403.1}; Flags: Precursor;; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.
hypothetical protein
13_1_40cm_scaffold_5331_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9155..9337)
DNA (183bp) protein (61aa)
4-oxalocrotonate tautomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-] Tax=GWA2_Rokubacteria_73_35_curated
4-oxalocrotonate tautomerase id=4541114 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-oxalocrotonate tautomerase
13_1_40cm_scaffold_5331_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9350..9673)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RDI9_DESPD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_scaffold_5331_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9687..10865)
DNA (1179bp) protein (393aa)
protein C7orf10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4712288 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
protein C7orf10
13_1_40cm_scaffold_5331_13
unknown

Not on your lists

10991..11725
DNA (735bp) protein (245aa)

This feature has no annotations

13_1_40cm_scaffold_5331_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11616..12002)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIC3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67273.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_scaffold_5331_15
unknown

Not on your lists

comp(12171..12545)
DNA (375bp) protein (125aa)

This feature has no annotations

Displaying 15 items

View Taxonomy