ggKbase home page

13_1_40cm_scaffold_2472

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2472_1
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(25..1470)
DNA (1446bp) protein (482aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C816_SPHTD
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ACZ39959.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae
13_1_40cm_scaffold_2472_2
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists


comp(1490..2638)
DNA (1149bp) protein (383aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=GWE2_Spirochaetes_31_10_curated
Glycine--tRNA ligase id=1266806 bin=GWE1_Spirochaetes_32_154 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
glycyl-tRNA synthetase
13_1_40cm_scaffold_2472_3
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2833..3594)
DNA (762bp) protein (254aa)
DNA repair protein RecO n=2 Tax=Mycobacterium smegmatis RepID=RECO_MYCS2
DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1214915 species="Bacteria; Actinobacteria; Co
13_1_40cm_scaffold_2472_4

Not on your lists

comp(3557..4909)
DNA (1353bp) protein (451aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN65157.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=24430947 bin=RBG_19FT_COMBO_GAL15_69_19 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
CBS domain-containing protein
13_1_40cm_scaffold_2472_5
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4923..5912)
DNA (990bp) protein (330aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D663_PELTS
PrsA; phosphoribosylpyrophosphate synthetase
13_1_40cm_scaffold_2472_6
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5909..7132)
DNA (1224bp) protein (408aa)
bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CLR3_DESK7
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" s
13_1_40cm_scaffold_2472_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7308..8399)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U9A6_OCEP5
Uncharacterized protein {ECO:0000313|EMBL:CDH45591.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
hypothetical protein
13_1_40cm_scaffold_2472_8
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

8465..10960
DNA (2496bp) protein (832aa)
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L019_THERP
13_1_40cm_scaffold_2472_9
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(10866..11627)
DNA (762bp) protein (254aa)
CobB/CobQ-like glutamine amidotransferase; K07009 id=24518466 bin=RBG_19FT_COMBO_GAL15_69_19 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
glutamine amidotransferase
CobB/CobQ domain protein glutamine amidotransferase {ECO:0000313|EMBL:ABU57578.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexu
13_1_40cm_scaffold_2472_10
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11600..12967)
DNA (1368bp) protein (456aa)
Putative uncharacterized protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IBX2_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFO81300.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscill
UDP-N-acetylmuramyl tripeptide synthase
13_1_40cm_scaffold_2472_11
Idiomarina salinarum, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12964..13716)
DNA (753bp) protein (251aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI00037275A6
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
13_1_40cm_scaffold_2472_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13713..14237)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thermus oshimai RepID=UPI0003686A7A
carbonic anhydrase
Carbonic anhydrases/acetyltransferases isoleucine patch superfamily-like protein {ECO:0000313|EMBL:ABG04710.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobac
13_1_40cm_scaffold_2472_13
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

Not on your lists


14360..14635
DNA (276bp) protein (92aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_16_Chloroflexi_50_11_curated
13_1_40cm_scaffold_2472_14
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14646..15605)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DBQ0_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EMT50782.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
yqeN; hypothetical protein
13_1_40cm_scaffold_2472_15
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(15619..17832)
DNA (2214bp) protein (738aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RBG_13_Chloroflexi_54_9_curated
Putative competence protein ComEC id=1876984 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
comEC; competence protein ComEC
13_1_40cm_scaffold_2472_16
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(17829..18128)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI0003803C84
competence protein ComEA-like protein; K02237 competence protein ComEA Tax=RBG_16_Zixibacteria_48_11_curated
13_1_40cm_scaffold_2472_trna_1
unknown

Not on your lists

comp(18364..18434)
DNA (71bp)
transferRNA
13_1_40cm_scaffold_2472_17
unknown

Not on your lists

18519..18929
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_40cm_scaffold_2472_18
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists


comp(19026..21392)
DNA (2367bp) protein (789aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=309799 species="Bacteria; Dictyog
Leucine--tRNA ligase n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YFG5_DICT6
13_1_40cm_scaffold_2472_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21454..22278)
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZR1_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG03117.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacte
13_1_40cm_scaffold_2472_20
Thermococcus eurythermalis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

22302..22787
DNA (486bp) protein (162aa)
Histidine triad (HIT) protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RBX4_9EURY
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
Thermococcus eurythermalis strain A501, complete genome {ECO:0000313|EMBL:AIU70103.1}; TaxID=1505907 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" sour
13_1_40cm_scaffold_2472_21
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(22762..24237)
DNA (1476bp) protein (492aa)
Amidohydrolase 3 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G8G6_CHLAD
amidohydrolase 3
Amidohydrolase 3 {ECO:0000313|EMBL:ACL24228.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggreg
13_1_40cm_scaffold_2472_22
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24234..25367)
DNA (1134bp) protein (378aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQ21_KYRT2
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ADG06430.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain
13_1_40cm_scaffold_2472_23

Not on your lists

25571..26221
DNA (651bp) protein (217aa)
LemA-like protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B255F id=3829 bin=ACD12 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
LemA-like protein {ECO:0000313|EMBL:EKE14380.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
LemA family protein
13_1_40cm_scaffold_2472_24
unknown

Not on your lists

comp(26332..26442)
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 25 items

View Taxonomy