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13_1_40cm_scaffold_142

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_142_trna_1
unknown

Not on your lists

comp(298..370)
DNA (73bp)
transferRNA
13_1_40cm_scaffold_142_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(420..629)
DNA (210bp) protein (70aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4189570 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces viridochromogenes genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_142_2
unknown

Not on your lists

1154..1372
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_scaffold_142_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2106..3074)
DNA (969bp) protein (323aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aspartate/glutamate/hydantoin racemase (Fragment) id=3927650 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_142_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3071..4864)
DNA (1794bp) protein (598aa)
malto-oligosyltrehalose trehalohydrolase; K01236 maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Malto-oligosyltrehalose trehalohydrolase id=3927649 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
malto-oligosyltrehalose trehalohydrolase
13_1_40cm_scaffold_142_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4911..6608
DNA (1698bp) protein (566aa)
putative alpha-amylase (EC:3.2.1.1) Tax=GWA2_Rokubacteria_73_35_curated
putative alpha-amylase (EC:3.2.1.1)
Glycoside hydrolase family 57 id=3927648 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_142_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6612..7856
DNA (1245bp) protein (415aa)
ADP-glucose pyrophosphorylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glucose-1-phosphate adenylyltransferase id=3927644 bin=GWA2_Methylomirabilis_73_35 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glgC; glucose-1-phosphate adenylyltransferase
13_1_40cm_scaffold_142_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7856..10249
DNA (2394bp) protein (798aa)
glycoside hydrolase Tax=GWA2_Rokubacteria_73_35_curated
Glycoside hydrolase family 57 id=3927642 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycoside hydrolase
13_1_40cm_scaffold_142_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10246..11073
DNA (828bp) protein (276aa)
maltooligosyl trehalose synthase (EC:5.4.99.15)
putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Maltooligosyl trehalose synthase id=5032670 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_142_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11076..11741
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=5032669 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_142_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11738..12928
DNA (1191bp) protein (397aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=5032668 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_scaffold_142_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12925..14184
DNA (1260bp) protein (420aa)
Glycosyl transferase, family 2 id=5032667 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase
13_1_40cm_scaffold_142_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14184..16136
DNA (1953bp) protein (651aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase id=4667512 bin=GWF2_Methylomirabilis_70_14 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_142_13
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16170..16421)
DNA (252bp) protein (84aa)
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein id=14430026 bin=bin3_NC10 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_142_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17136..18809
DNA (1674bp) protein (558aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] id=14631573 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
trehalose synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trehalose synthase
13_1_40cm_scaffold_142_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19843..20094
DNA (252bp) protein (84aa)
trehalose synthase/maltokinase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] Tax=GWA2_Rokubacteria_70_23_curated
Trehalose synthase/probable maltokinase id=4667508 bin=GWF2_Methylomirabilis_70_14 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trehalose synthase
13_1_40cm_scaffold_142_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20045..20548)
DNA (504bp) protein (168aa)
hypothetical protein id=3927638 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_142_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20554..22152)
DNA (1599bp) protein (533aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=GWA2_Rokubacteria_73_35_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3927636 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_142_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22157..23176)
DNA (1020bp) protein (340aa)
AIR synthase-like protein Tax=GWA2_Rokubacteria_73_35_curated
AIR synthase-like protein id=14626878 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AIR synthase-like protein domain-containing protein
13_1_40cm_scaffold_142_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23181..24110
DNA (930bp) protein (310aa)
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] id=14626883 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate formiminotransferase (EC:2.1.2.5)
13_1_40cm_scaffold_142_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24207..24434)
DNA (228bp) protein (76aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_142_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24568..24717)
DNA (150bp) protein (50aa)
YHS domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
YHS domain protein id=3927626 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YHS domain-containing protein
13_1_40cm_scaffold_142_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24729..26957)
DNA (2229bp) protein (743aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
copA; Cu(2+)-binding/translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase id=4901297 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_142_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26966..27247)
DNA (282bp) protein (94aa)
Uncharacterized protein id=3927621 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_scaffold_142_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27334..27747)
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3927613 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_142_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28101..29630)
DNA (1530bp) protein (510aa)
cafA; ribonuclease G; K08301 ribonuclease G [EC:3.1.26.-] Tax=GWA2_Rokubacteria_73_35_curated
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] id=14626887 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease, Rne/Rng family
13_1_40cm_scaffold_142_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(29686..30780)
DNA (1095bp) protein (365aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rod shape-determining protein RodA id=3227259 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein RodA
13_1_40cm_scaffold_142_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30857..32683)
DNA (1827bp) protein (609aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_1_40cm_scaffold_142_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(32680..33168)
DNA (489bp) protein (163aa)
hypothetical protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_142_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33174..34010)
DNA (837bp) protein (279aa)
rod shape-determining protein MreC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Rod shape-determining protein MreC
Displaying items 1-30 of 62 in total

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