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13_1_40cm_scaffold_183

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_183_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..209)
DNA (207bp) protein (69aa)
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4092238 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_183_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(556..1554)
DNA (999bp) protein (333aa)
poluprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Polyprenyl synthetase id=4092237 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
octaprenyl diphosphate synthase
13_1_40cm_scaffold_183_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1565..2290)
DNA (726bp) protein (242aa)
Putative uncharacterized protein id=4092236 bin=GWA2_Methylomirabilis_73_35 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_183_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2293..2790)
DNA (498bp) protein (166aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4576787 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_183_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3013..4614)
DNA (1602bp) protein (534aa)
Sbm; methylmalonyl-CoA mutase N-terminal domain-containing protein; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Methylmalonyl-CoA mutase, N-terminal domain id=4092234 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylmalonyl-CoA mutase N-terminal domain-containing protein
13_1_40cm_scaffold_183_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4611..6161)
DNA (1551bp) protein (517aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
propionyl-CoA carboxylase beta chain (EC:6.4.1.3)
Putative propionyl-CoA carboxylase beta chain id=4092233 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_183_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6299..6691
DNA (393bp) protein (131aa)
hypothetical protein id=4092232 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_183_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6684..7001
DNA (318bp) protein (106aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627456 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_183_9
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6994..7587
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMW5_SYNFM
hypothetical protein Tax=RBG_16_Desulfobacca_60_12_curated
hypothetical protein
13_1_40cm_scaffold_183_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7620..7796)
DNA (177bp) protein (59aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-] Tax=GWC2_Rokubacteria_70_16_curated
Acyl-CoA dehydrogenase-like protein id=2937393 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_183_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7801..9183)
DNA (1383bp) protein (461aa)
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4) id=14627457 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
13_1_40cm_scaffold_183_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9397..10719)
DNA (1323bp) protein (441aa)
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12) Tax=
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12) id=14627458 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
13_1_40cm_scaffold_183_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10723..11712)
DNA (990bp) protein (330aa)
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) id=14627459 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) Tax=CSP1_6_Rokubacteria
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
13_1_40cm_scaffold_183_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11729..12733)
DNA (1005bp) protein (335aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) id=14627460 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
13_1_40cm_scaffold_183_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12776..13078)
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=GWA2_Rokubacteria_70_23_curated
NADH-quinone oxidoreductase subunit K id=4688381 bin=GWC2_Methylomirabilis_70_24 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NADH dehydrogenase subunit K
13_1_40cm_scaffold_183_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13075..13566)
DNA (492bp) protein (164aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=14627462 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
13_1_40cm_scaffold_183_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13566..14105)
DNA (540bp) protein (180aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=14627537 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
13_1_40cm_scaffold_183_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14105..15199)
DNA (1095bp) protein (365aa)
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=GWA2_Rokubacteria_70_23_curated
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=14627536 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5)
13_1_40cm_scaffold_183_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15285..16892)
DNA (1608bp) protein (536aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I, G subunit (75 kDa) id=3990316 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin oxidoreductase Fe4S4 region
13_1_40cm_scaffold_183_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17127..18353)
DNA (1227bp) protein (409aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoF; NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I, chain F) (NDH-1, chain F) (EC:1.6.5.3 1.6.99.5) id=14627534 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase I subunit F
13_1_40cm_scaffold_183_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18350..18835)
DNA (486bp) protein (162aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I subunit E id=2992125 bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH-quinone oxidoreductase subunit E
13_1_40cm_scaffold_183_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18832..20208)
DNA (1377bp) protein (459aa)
NADH dehydrogenase I subunit D (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH-quinone oxidoreductase subunit D id=2992135 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH dehydrogenase I subunit D
13_1_40cm_scaffold_183_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20208..20705)
DNA (498bp) protein (166aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH-quinone oxidoreductase subunit C id=2992141 bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH (or F420H2) dehydrogenase subunit C
13_1_40cm_scaffold_183_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20822..21280)
DNA (459bp) protein (153aa)
nuoB1_[H]; NADH-ubiquinone oxidoreductase chain B (EC:1.6.5.3) Tax=GWA2_Rokubacteria_70_23_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B id=2992145 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_183_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21271..21624)
DNA (354bp) protein (118aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A id=4828151 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_183_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21621..22535)
DNA (915bp) protein (305aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lipA; Lipoyl synthase (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) (EC:2.8.1.-)
Lipoyl synthase id=4828152 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_183_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22610..22846
DNA (237bp) protein (79aa)
hypothetical protein; K03744 LemA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4426880 bin=GWC2_Methylomirabilis_70_16 species=Labrenzia aggregata genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
LemA family protein
13_1_40cm_scaffold_183_trna_1
unknown

Not on your lists

comp(23079..23160)
DNA (82bp)
transferRNA
13_1_40cm_scaffold_183_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23192..24052)
DNA (861bp) protein (287aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide ABC transporter, membrane protein id=4787929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter membrane protein
13_1_40cm_scaffold_183_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24057..25049)
DNA (993bp) protein (331aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Binding-protein-dependent transport systems inner membrane component id=4787931 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Displaying items 1-30 of 47 in total

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