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13_1_40cm_scaffold_2079

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2079_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2..625)
DNA (624bp) protein (208aa)
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_1_40cm_scaffold_2079_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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870..1262
DNA (393bp) protein (131aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAS9_9SPHN
DNA ligase D
13_1_40cm_scaffold_2079_3
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1259..2278
DNA (1020bp) protein (340aa)
Uncharacterized protein {ECO:0000313|EMBL:EJZ29763.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source=
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2079_trna_1
unknown

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2599..2683
DNA (85bp)
transferRNA
13_1_40cm_scaffold_2079_trna_2
unknown

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2752..2824
DNA (73bp)
transferRNA
13_1_40cm_scaffold_2079_4
unknown

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comp(2897..3271)
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_40cm_scaffold_2079_5
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3960..6044
DNA (2085bp) protein (695aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RBG_16_Deltaproteobacteria_50_11_curated
Histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_2079_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6144..6950)
DNA (807bp) protein (269aa)
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase 2 family protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyltransferase
13_1_40cm_scaffold_2079_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(6947..7666)
DNA (720bp) protein (240aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_scaffold_2079_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7663..8310)
DNA (648bp) protein (216aa)
type 12 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 12 id=1906302 bin=GWA2_Methylomirabilis_73_35 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
13_1_40cm_scaffold_2079_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8288..9733)
DNA (1446bp) protein (482aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1906301 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2079_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9788..10495)
DNA (708bp) protein (236aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transport system protein id=4288073 bin=GWF2_Methylomirabilis_70_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_2079_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10495..11415)
DNA (921bp) protein (307aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=4288070 bin=GWF2_Methylomirabilis_70_14 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_2079_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11412..12290)
DNA (879bp) protein (293aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein I id=1906297 bin=GWA2_Methylomirabilis_73_35 species=Haloarcula vallismortis genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_scaffold_2079_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12454..13647)
DNA (1194bp) protein (398aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
13_1_40cm_scaffold_2079_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13671..14939
DNA (1269bp) protein (423aa)
Formyl-CoA transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F id=14625352 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_2079_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14964..15464)
DNA (501bp) protein (167aa)
id=3674960 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3674960 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2079_16
unknown

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15533..15676
DNA (144bp) protein (48aa)

This feature has no annotations

13_1_40cm_scaffold_2079_17

Not on your lists

15904..16668
DNA (765bp) protein (255aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK76744.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_scaffold_2079_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(17108..18487)
DNA (1380bp) protein (460aa)
acyltransferase domain-containing protein id=14627706 bin=bin7_NC10_sister species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyltransferase domain-containing protein Tax=CSP1_6_Rokubacteria
acyltransferase domain-containing protein
13_1_40cm_scaffold_2079_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18516..18839)
DNA (324bp) protein (108aa)
UPF0076 protein Tax=GWA2_Rokubacteria_70_23_curated
UPF0076 protein id=4219924 bin=GWC2_Methylomirabilis_70_24 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
endoribonuclease L-PSP
13_1_40cm_scaffold_2079_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18934..19350)
DNA (417bp) protein (139aa)
hypothetical protein id=3850604 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 22 items

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