ggKbase home page

13_1_40cm_scaffold_2178

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2178_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3..713)
DNA (711bp) protein (237aa)
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) id=14627063 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75)
13_1_40cm_scaffold_2178_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(713..1339)
DNA (627bp) protein (209aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Siroheme synthase id=4306752 bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrin-III C-methyltransferase
13_1_40cm_scaffold_2178_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1339..1554)
DNA (216bp) protein (72aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_scaffold_2178_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1656..2840)
DNA (1185bp) protein (395aa)
sat; Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) (EC:2.7.7.4) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
sat; Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) (EC:2.7.7.4)
Sulfate adenylyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMZ6_9BACT
13_1_40cm_scaffold_2178_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(2840..3730)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMZ1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68091.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_scaffold_2178_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3727..4452)
DNA (726bp) protein (242aa)
cysH; phosphoadenosine phosphosulfate reductase(PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) (EC:1.8.4.8) Tax=RIFCSPLOWO2_12_
Putative PAPS reductase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIP3_NITGG
PAPS reductase
13_1_40cm_scaffold_2178_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4439..5272)
DNA (834bp) protein (278aa)
Putative Sulfite/ferredoxin reductase (CysI) id=4894274 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase
13_1_40cm_scaffold_2178_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5288..6988)
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003741C12
nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein {ECO:0000313|EMBL:ABF41374.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candid
13_1_40cm_scaffold_2178_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7384..7995
DNA (612bp) protein (204aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3667684 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
regulator, LuxR family
13_1_40cm_scaffold_2178_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8887..9501
DNA (615bp) protein (205aa)
urea carboxylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003751243
hypothetical protein; K09967 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_40cm_scaffold_2178_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9896..10489)
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3776761 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2178_12
unknown

Not on your lists

comp(10486..10668)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_scaffold_2178_13
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

11115..11363
DNA (249bp) protein (83aa)
Phage integrase protein (DNA breaking and rejoining enzyme) n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QDC1_DESAH id=5224611 bin=16ft_combo_ws3_JS1 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phage integrase protein (DNA breaking and rejoining enzyme) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
13_1_40cm_scaffold_2178_trna_2
unknown

Not on your lists

comp(11446..11519)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_2178_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11781..12089
DNA (309bp) protein (103aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNP-1 like RNA-binding protein id=4283016 bin=GWC2_Methylomirabilis_70_16 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein
13_1_40cm_scaffold_2178_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12103..12318
DNA (216bp) protein (72aa)
hypothetical protein id=4327908 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_2178_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12315..12521
DNA (207bp) protein (69aa)
30S ribosomal protein S21 id=4327962 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S21
13_1_40cm_scaffold_2178_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12518..12817)
DNA (300bp) protein (100aa)
id=14625264 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_2178_trna_1
unknown

Not on your lists

comp(12849..12922)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_2178_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(12900..13511)
DNA (612bp) protein (204aa)
non-canonical purine NTP pyrophosphatase (EC:3.1.4.1) Tax=GWA2_Rokubacteria_73_35_curated
non-canonical purine NTP pyrophosphatase (EC:3.1.4.1)
Non-canonical purine NTP pyrophosphatase id=4994650 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2178_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13534..14265)
DNA (732bp) protein (244aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease PH id=4994649 bin=GWA2_Methylomirabilis_73_35 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease PH
13_1_40cm_scaffold_2178_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14272..15693)
DNA (1422bp) protein (474aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) id=14625267 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Displaying 22 items

View Taxonomy