ggKbase home page

13_1_40cm_scaffold_2689

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2689_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..283
DNA (282bp) protein (94aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] Tax=GWA2_Rokubacteria_73_35_curated
Glutamine--tRNA ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C713_9PLAN
glutaminyl-tRNA synthetase
13_1_40cm_scaffold_2689_2
unknown

Not on your lists

444..749
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_scaffold_2689_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1445..2377
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXA3_METNO
Uncharacterized protein {ECO:0000313|EMBL:ETX05793.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_scaffold_2689_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2836..3591
DNA (756bp) protein (252aa)
mandelate racemase (EC:5.1.2.2)
Mandelate racemase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW58_PSEUX
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:GAN76276.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;"
13_1_40cm_scaffold_2689_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3683..4243
DNA (561bp) protein (187aa)
Conserved domain protein id=4793588 bin=GWC2_Methylomirabilis_70_16 species=Coxiella burnetii genus=Coxiella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_2689_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4296..4649)
DNA (354bp) protein (118aa)
DnaK suppressor protein-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulator, TraR/DksA family id=3708851 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TraR/DksA family zinc finger transcriptional regulator
13_1_40cm_scaffold_2689_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4923..5780)
DNA (858bp) protein (286aa)
pirin n=1 Tax=Dyella ginsengisoli RepID=UPI000349AD05
Pirin-related protein Tax=RBG_16_Acidobacteria_70_10_curated
Pirin-related protein
13_1_40cm_scaffold_2689_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(5798..6364)
DNA (567bp) protein (189aa)
Putative NADPH-dependent FMN reductase n=1 Tax=uncultured archaeon RepID=I3RKJ8_9ARCH
putative flavoprotein
Putative flavoprotein {ECO:0000313|EMBL:AIF85125.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitros
13_1_40cm_scaffold_2689_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6473..6994)
DNA (522bp) protein (174aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=4161394 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2689_10
unknown

Not on your lists

comp(7123..7788)
DNA (666bp) protein (222aa)

This feature has no annotations

13_1_40cm_scaffold_2689_11
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7796..8563)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR id=3926288 bin=GWC2_Syntrophus__56_31 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein Tax=GWC2_Syntrophus_56_31_curated
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
13_1_40cm_scaffold_2689_12
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8848..9435)
DNA (588bp) protein (196aa)
Putative sulfite oxidase cytochrome subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE85_METPP
sulfite oxidase cytochrome subunit
Putative sulfite oxidase cytochrome subunit {ECO:0000313|EMBL:ABM93874.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petro
13_1_40cm_scaffold_2689_13
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9422..10681)
DNA (1260bp) protein (420aa)
Putative sulfite oxidase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE84_METPP
sulfite oxidase
Putative sulfite oxidase {ECO:0000313|EMBL:ABM93873.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain P
13_1_40cm_scaffold_2689_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10799..11926
DNA (1128bp) protein (376aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GM8_POLSJ
extracellular ligand-binding receptor
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABE42314.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
13_1_40cm_scaffold_2689_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11945..13192
DNA (1248bp) protein (416aa)
endoribonuclease L-PSP (EC:3.5.99.5) Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKM5_9SPHN
hypothetical protein
13_1_40cm_scaffold_2689_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13396..13998
DNA (603bp) protein (201aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GM5_POLSJ
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE42317.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Pol
13_1_40cm_scaffold_2689_17
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14006..14977
DNA (972bp) protein (324aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GM4_POLSJ
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:ABE42318.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Pol
13_1_40cm_scaffold_2689_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14970..15752
DNA (783bp) protein (261aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IAY5_METNO
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL55378.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
13_1_40cm_scaffold_2689_19

Not on your lists

15739..16458
DNA (720bp) protein (240aa)
amino acid ABC transporter ATPase n=1 Tax=Thermus islandicus RepID=UPI0003B2F5A7
High-affinity branched-chain amino acid transport ATP-binding protein livF (LIV-I protein F) {ECO:0000313|EMBL:CBH97419.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metage
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)
13_1_40cm_scaffold_2689_20
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(16632..17411)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000374761A
methyltransferase type 11
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_scaffold_2689_21
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17807..19030)
DNA (1224bp) protein (408aa)
Phosphoesterase, PA-phosphatase related protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12CZ6_POLSJ
PA-phosphatase-like protein phosphoesterase
Phosphoesterase, PA-phosphatase related protein {ECO:0000313|EMBL:ABE43596.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; P
13_1_40cm_scaffold_2689_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19067..20719)
DNA (1653bp) protein (551aa)
Putative hydrolase transmembrane protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YP81_9GAMM
SMP-30/gluconolaconase/LRE domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hydrolase transmembrane protein
13_1_40cm_scaffold_2689_23
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20798..22288
DNA (1491bp) protein (497aa)
Beta-lactamase domain-containing protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BTR8_9GAMM
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EXI68879.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulib
beta-lactamase domain-containing protein
13_1_40cm_scaffold_2689_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22528..23013)
DNA (486bp) protein (162aa)
putative competence-damaged protein, CinA like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence/damage-inducible protein cinA id=4829158 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
competence-damaged inducible protein
13_1_40cm_scaffold_2689_25
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23134..24111)
DNA (978bp) protein (326aa)
amidohydrolase family protein; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Aminocarboxymuconate-semialdehyde decarboxylase (Fragment) id=1937569 bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. TJI49 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase 2
13_1_40cm_scaffold_2689_26
unknown

Not on your lists

comp(24161..24625)
DNA (465bp) protein (155aa)

This feature has no annotations

13_1_40cm_scaffold_2689_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(24622..25599)
DNA (978bp) protein (326aa)
cupin; K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] id=14625736 bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
cupin; K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] Tax=CSP1_6_Rokubacteria
cupin
13_1_40cm_scaffold_2689_28
unknown

Not on your lists

comp(25625..25816)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_scaffold_2689_29
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25813..26730)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PXF4_9FIRM
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:ADL12832.1}; Flags: Precursor;; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales
13_1_40cm_scaffold_2689_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26758..27696)
DNA (939bp) protein (313aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=beta proteobacterium CB RepID=M1SU42_9PROT
SMP-30/Gluconolaconase/LRE domain protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SMP-30/Gluconolaconase/LRE domain protein
Displaying items 1-30 of 33 in total

View Taxonomy