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13_1_40cm_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_290_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3..419)
DNA (417bp) protein (139aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8N0_SINAD
56kDa selenium binding protein (SBP56)
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:AGA24986.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Sin
13_1_40cm_scaffold_290_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

548..1168
DNA (621bp) protein (207aa)
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=4657189 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_290_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1158..2045
DNA (888bp) protein (296aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit id=4657188 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_290_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2053..2910
DNA (858bp) protein (286aa)
putative PSP1-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tpl protein id=14626710 bin=bin7_NC10_sister species=Shuttleworthia satelles genus=Shuttleworthia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
PSP1 domain-containing protein
13_1_40cm_scaffold_290_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


2907..4817
DNA (1911bp) protein (637aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=14626711 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=CSP1_6_Rokubacteria
methionyl-tRNA synthetase (EC:6.1.1.10)
13_1_40cm_scaffold_290_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4823..5053
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4657184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_290_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5053..6084
DNA (1032bp) protein (344aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4657183 bin=GWA2_Methylomirabilis_73_35 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_290_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6081..6857
DNA (777bp) protein (259aa)
TatD family deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase id=4367866 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hydrolase, tatd family
13_1_40cm_scaffold_290_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6984..7796
DNA (813bp) protein (271aa)
aminopeptidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase id=4029897 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aminopeptidase
13_1_40cm_scaffold_290_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7826..8140)
DNA (315bp) protein (105aa)
id=14628098 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14628098 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_290_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8182..10479
DNA (2298bp) protein (766aa)
carbon monoxide dehydrogenase (EC:1.2.99.2) Tax=GWC2_Rokubacteria_70_16_curated
carbon monoxide dehydrogenase (EC:1.2.99.2)
carbon monoxide dehydrogenase id=14628099 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_290_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10579..11859
DNA (1281bp) protein (427aa)
homogentisate 1,2-dioxygenase (EC:1.13.11.5); K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase id=4840543 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_290_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11859..12854
DNA (996bp) protein (332aa)
Luciferase-like, subgroup id=4762328 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
luciferase-like protein Tax=GWA2_Rokubacteria_70_23_curated
luciferase-like protein
13_1_40cm_scaffold_290_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12915..13796
DNA (882bp) protein (294aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4029904 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_290_15
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

13793..14323
DNA (531bp) protein (177aa)
GCN5-related N-acetyltransferase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRE0_ROSCS
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABU60136.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseif
13_1_40cm_scaffold_290_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14320..15063
DNA (744bp) protein (248aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative intramembrane serine protease id=2322384 bin=GWA2_Methylomirabilis_73_35 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
intramembrane serine protease
13_1_40cm_scaffold_290_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15267..16226)
DNA (960bp) protein (320aa)
peptidase S58, DmpA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-aminopeptidase/D-esterase id=4429850 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S58, DmpA
13_1_40cm_scaffold_290_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16223..17353)
DNA (1131bp) protein (377aa)
id=4698146 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4698146 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_290_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17346..17861)
DNA (516bp) protein (172aa)
hypothetical protein id=4429854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_290_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17898..18239
DNA (342bp) protein (114aa)
id=14625964 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14625964 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_290_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18074..19657)
DNA (1584bp) protein (528aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidinol-phosphate aminotransferase
13_1_40cm_scaffold_290_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19726..22404
DNA (2679bp) protein (893aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=14625966 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
13_1_40cm_scaffold_290_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22424..25063
DNA (2640bp) protein (880aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lytic transglycosylase, catalytic
13_1_40cm_scaffold_290_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25206..25640
DNA (435bp) protein (145aa)
UspA domain-containing protein id=3995090 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UspA domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
putative universal stress protein
13_1_40cm_scaffold_290_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25662..26246
DNA (585bp) protein (195aa)
putative acetate--CoA ligase (NDP forming) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Possible acetyl-CoA synthetase id=3311261 bin=GWC2_Methylomirabilis_70_16 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA synthetase
13_1_40cm_scaffold_290_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26236..26919)
DNA (684bp) protein (228aa)
Aminotransferase, class I and II Tax=GWA2_Rokubacteria_73_35_curated
id=4762290 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_290_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27043..27459)
DNA (417bp) protein (139aa)
id=4143380 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4143380 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_290_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

27602..27979
DNA (378bp) protein (126aa)
methylmalonyl CoA epimerase (EC:5.1.99.1)
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=14626134 bin=bin7_NC10_sister species=Pandoraea sp. SD6-2 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_290_29
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

28044..31607
DNA (3564bp) protein (1188aa)
adenylyl cyclase Tax=GWC2_Rokubacteria_70_16_curated
Adenylyl cyclase class-3/4/guanylyl cyclase:Tetratricopeptide TPR_4 id=4599716 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATP synthase beta subunit/transription termination factor Rho
13_1_40cm_scaffold_290_30
unknown

Not on your lists

comp(31604..31942)
DNA (339bp) protein (113aa)

This feature has no annotations

Displaying items 1-30 of 46 in total

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