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13_1_40cm_scaffold_3019

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3019_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5..1024)
DNA (1020bp) protein (340aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=1782162 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_scaffold_3019_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1021..2058)
DNA (1038bp) protein (346aa)
putative amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase id=4770810 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
13_1_40cm_scaffold_3019_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2217..2507)
DNA (291bp) protein (97aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) id=14626322 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) Tax=CSP1_6_Rokubacteria
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
13_1_40cm_scaffold_3019_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2668..5589
DNA (2922bp) protein (974aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003741C12
nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein {ECO:0000313|EMBL:ABF41374.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candid
13_1_40cm_scaffold_3019_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

5629..7521
DNA (1893bp) protein (631aa)
thiamine pyrophosphate binding domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Thiamine pyrophosphate binding domain-containing protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CVL2_9BURK
thiamine pyrophosphate binding domain-containing protein
13_1_40cm_scaffold_3019_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

7539..7892
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6H4_SPHWW
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_scaffold_3019_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7911..8297)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FWV0_9CYAN
aldo/keto reductase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
aldo/keto reductase
13_1_40cm_scaffold_3019_8
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8352..9233
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GQD0_CUPNN
hypothetical protein; K06889 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
hypothetical protein
13_1_40cm_scaffold_3019_9
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9230..10303
DNA (1074bp) protein (358aa)
Malate dehydrogenase n=1 Tax=Frankia sp. CN3 RepID=G6HHY4_9ACTO
Malate/L-lactate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
Bll6274 protein
13_1_40cm_scaffold_3019_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10290..10760)
DNA (471bp) protein (157aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=4141959 bin=GWA2_Methylomirabilis_73_35 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glyoxalase/bleomycin resistance protein/dioxygenase Tax=GWA2_Rokubacteria_73_35_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_scaffold_3019_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10757..11101)
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=4935528 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_3019_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11169..11633
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4221494 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3019_13
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11684..12169
DNA (486bp) protein (162aa)
Endoribonuclease L-PSP n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46PT0_CUPPJ
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AAZ64854.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubo
13_1_40cm_scaffold_3019_14
unknown

Not on your lists

12139..12312
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_scaffold_3019_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12543..13811
DNA (1269bp) protein (423aa)
Putative uncharacterized protein id=4400730 bin=GWF2_Methylomirabilis_70_14 species=uncultured Aminicenantes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA/RNA helicase Tax=GWA2_Rokubacteria_70_23_curated
DEAD/DEAH box helicase domain protein
13_1_40cm_scaffold_3019_16
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13987..14862
DNA (876bp) protein (292aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) id=14630043 bin=bin8_Chloro species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
xthA; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III {ECO:0000313|EMBL:AKF09296.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandar
13_1_40cm_scaffold_3019_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14859..15842
DNA (984bp) protein (328aa)
Putative uncharacterized protein id=3995087 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3019_18
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(15823..16743)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037989E5
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
13_1_40cm_scaffold_3019_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16827..17999
DNA (1173bp) protein (391aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TPR repeat id=4221516 bin=GWA2_Methylomirabilis_73_35 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_3019_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18073..20685
DNA (2613bp) protein (871aa)
putative transmembrane signal transduction receptor and sigma-54 dependent response regulator Tax=GWA2_Rokubacteria_73_35_curated
Putative transmembrane signal transduction receptor and sigma-54 dependent response regulator id=4221518 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transmembrane signal transduction receptor and sigma-54 dependent response regulator
13_1_40cm_scaffold_3019_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20849..21517
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBU6_9BACT
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3019_22
unknown

Not on your lists

21558..22208
DNA (651bp) protein (217aa)

This feature has no annotations

13_1_40cm_scaffold_3019_23
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(22217..22972)
DNA (756bp) protein (252aa)
ATPase n=1 Tax=Rhodovulum sp. PH10 RepID=J9DTD5_9RHOB
ssuB; putative sulfonate ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ABC transporter related
13_1_40cm_scaffold_3019_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23038..24144)
DNA (1107bp) protein (369aa)
Transporter, chromate ion transporter (CHR) family n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JM15_SYNJB
Uncharacterized protein {ECO:0000313|EMBL:ETX06016.1}; Flags: Fragment;; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
chromate transporter
13_1_40cm_scaffold_3019_25
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(24266..24703)
DNA (438bp) protein (146aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodovulum sp. PH10 RepID=J9DDQ6_9RHOB
ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_scaffold_3019_26
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24812..25324)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46YT3_CUPPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ61700.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatub
13_1_40cm_scaffold_3019_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25461..26009)
DNA (549bp) protein (183aa)
Lyase-like protein n=1 Tax=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) RepID=Q15VY4_PSEA6
lyase -like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
lyase -like protein
13_1_40cm_scaffold_3019_28
unknown

Not on your lists

26145..26387
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_scaffold_3019_29
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

27139..28752
DNA (1614bp) protein (538aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_16_Acidobacteria_64_8_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 5 extracellular solute-binding protein
13_1_40cm_scaffold_3019_30
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

28758..29681
DNA (924bp) protein (308aa)
h16_A2950; ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RBG_13_Chloroflexi_46_14_curated
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
Displaying 30 items

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