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13_1_40cm_scaffold_4168

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4168_1
unknown

Not on your lists

352..705
-----------------
DNA (354bp)
protein (118aa)

This feature has no annotations

13_1_40cm_scaffold_4168_2
unknown

Not on your lists

851..1387
-----------------
DNA (537bp)
protein (179aa)

This feature has no annotations

13_1_40cm_scaffold_4168_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1512..1730
-----------------
DNA (219bp)
protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3823039 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_4168_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1727..1945
-----------------
DNA (219bp)
protein (73aa)
Putative uncharacterized protein id=3823040 bin=GWC2_Methylomirabilis_70_16 species=Gloeocapsa sp. PCC 7428 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_4168_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2272..2661
-----------------
DNA (390bp)
protein (130aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_1_40cm_scaffold_4168_6
unknown

Not on your lists

comp(3486..4109)
-----------------
DNA (624bp)
protein (208aa)

This feature has no annotations

13_1_40cm_scaffold_4168_7
unknown

Not on your lists

comp(4176..4295)
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

13_1_40cm_scaffold_4168_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4601..5545
-----------------
DNA (945bp)
protein (315aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625100 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_scaffold_4168_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5707..6459)
-----------------
DNA (753bp)
protein (251aa)
putative beta-lactamase-like protein Tax=GWA2_Rokubacteria_73_35_curated
Putative beta-lactamase-like protein id=4780187 bin=GWA2_Methylomirabilis_73_35 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase
13_1_40cm_scaffold_4168_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6511..8580
-----------------
DNA (2070bp)
protein (690aa)
Putative transmembrane sensor domain protein id=2227968 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
guanylate cyclase Tax=GWA2_Rokubacteria_73_35_curated
guanylate cyclase
N term transmembrane sensor domain protein. C term guanylate cyclase Cristina Butterfield (11/14/16)
13_1_40cm_scaffold_4168_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8619..9281
-----------------
DNA (663bp)
protein (221aa)
methyltransferase cognate corrinoid protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase cognate corrinoid protein id=14625094 bin=bin7_NC10_sister species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methyltransferase cognate corrinoid protein
Methanogenic corrinoid protein MtbC1 [Energy production and conversion]; Cristina Butterfield (11/14/16)
13_1_40cm_scaffold_4168_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9278..10228
-----------------
DNA (951bp)
protein (317aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homocysteine S-methyltransferase id=4217993 bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
5-methyltetrahydrofolate--homocysteine methyltransferase
Homocysteine S-methyltransferase; This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,. Cristina Butterfield (11/14/16)
13_1_40cm_scaffold_4168_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10427..11083
-----------------
DNA (657bp)
protein (219aa)
vitamin B12 dependent methionine synthase Tax=GWA2_Rokubacteria_73_35_curated
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Vitamin B12 dependent methionine synthase activation region
13_1_40cm_scaffold_4168_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11717..12445
-----------------
DNA (729bp)
protein (243aa)
echA8_3; enoyl-CoA dehydratase EchA8_3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA dehydratase EchA8_3 id=4547814 bin=GWC2_Methylomirabilis_70_24 species=Mycobacterium sp. genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_scaffold_4168_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12442..13632
-----------------
DNA (1191bp)
protein (397aa)
Formyl-CoA transferase (EC:2.8.3.16)
protein C7orf10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4712288 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_4168_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13629..14669
-----------------
DNA (1041bp)
protein (347aa)
Putative uncharacterized protein id=3132984 bin=GWF2_Methylomirabilis_70_14 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_4168_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14811..15335
-----------------
DNA (525bp)
protein (175aa)
shikimate dehydrogenase (EC:1.1.1.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4168_18
unknown

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comp(15390..15878)
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

13_1_40cm_scaffold_4168_19
GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, Methylomirabilis, Bacteria

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comp(16098..16553)
-----------------
DNA (456bp)
protein (152aa)
id=3228004 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
id=3228004 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4168_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17332..18495
-----------------
DNA (1164bp)
protein (388aa)
Amidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
13_1_40cm_scaffold_4168_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18499..20091
-----------------
DNA (1593bp)
protein (531aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
13_1_40cm_scaffold_4168_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20088..23117
-----------------
DNA (3030bp)
protein (1010aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_1_40cm_scaffold_4168_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23114..24466
-----------------
DNA (1353bp)
protein (451aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_1_40cm_scaffold_4168_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(24711..25154)
-----------------
DNA (444bp)
protein (148aa)
id=14625340 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_4168_25
unknown

Not on your lists

comp(25299..26120)
-----------------
DNA (822bp)
protein (274aa)

This feature has no annotations

13_1_40cm_scaffold_4168_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26537..26905
-----------------
DNA (369bp)
protein (123aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
putative RNA-binding protein RbpA
13_1_40cm_scaffold_4168_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27017..28903)
-----------------
DNA (1887bp)
protein (629aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_4168_28
unknown

Not on your lists

29000..29245
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

13_1_40cm_scaffold_4168_29
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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29353..29730
-----------------
DNA (378bp)
protein (126aa)
peptidase A2A; K06985 aspartyl protease family protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
Uncharacterized protein id=1842218 bin=GWD2_Deltaproteobacteria_55_8 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_scaffold_4168_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

29817..31253
-----------------
DNA (1437bp)
protein (479aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=GWA2_Rokubacteria_73_35_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=3708970 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 31 in total

View Taxonomy