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13_1_40cm_scaffold_426

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_426_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..1414
DNA (1413bp) protein (471aa)
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32) Tax=GWA2_Rokubacteria_73_35_curated
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] id=1709628 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_426_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1553..3082)
DNA (1530bp) protein (510aa)
propionyl-CoA carboxylase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative propionyl-CoA carboxylase beta subunit id=4243671 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propionyl-CoA carboxylase subunit beta
13_1_40cm_scaffold_426_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3099..4088)
DNA (990bp) protein (330aa)
RNA polymerase sigma-E factor id=1709623 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoE1; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma-e factor
13_1_40cm_scaffold_426_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4149..4640)
DNA (492bp) protein (164aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=1709621 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_426_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4677..5408)
DNA (732bp) protein (244aa)
Zinc/iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Zinc/iron transporter id=14627800 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Zinc/iron transporter
13_1_40cm_scaffold_426_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5427..7121
DNA (1695bp) protein (565aa)
General secretion pathway protein E (Type II traffic warden ATPase) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E (Type II traffic warden ATPase) id=14627801 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
General secretion pathway protein E (Type II traffic warden ATPase)
13_1_40cm_scaffold_426_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7127..8338
DNA (1212bp) protein (404aa)
gspF; general secretory pathway component, cryptic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gspF; general secretory pathway component, cryptic id=14627802 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
13_1_40cm_scaffold_426_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8338..8967
DNA (630bp) protein (210aa)
General secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudopilin, cryptic, general secretion pathway id=3269001 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gspG; pseudopilin, cryptic, general secretion pathway
13_1_40cm_scaffold_426_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8946..9392
DNA (447bp) protein (149aa)
xpsH; general secretion pathway protein H; K02457 general secretion pathway protein H Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein H id=3269002 bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein H
13_1_40cm_scaffold_426_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9389..9844
DNA (456bp) protein (152aa)
general secretion pathway protein H; K02458 general secretion pathway protein I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative General secretion pathway protein I, GspI (Modular protein) id=3269003 bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
General secretion pathway protein I, GspI
13_1_40cm_scaffold_426_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9844..10458
DNA (615bp) protein (205aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4806972 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_426_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10455..11393
DNA (939bp) protein (313aa)
general secretion pathway protein K; K02460 general secretion pathway protein K Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
General secretion pathway protein K id=4806971 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_426_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11496..13034
DNA (1539bp) protein (513aa)
fimbrial assembly family protein; K02461 general secretion pathway protein L Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fimbrial assembly family protein id=4806970 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fimbrial assembly family protein
13_1_40cm_scaffold_426_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13031..13600
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14628104 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_426_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13601..14314
DNA (714bp) protein (238aa)
Putative uncharacterized protein id=4806968 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
PA-phosphatase-like phosphodiesterase
13_1_40cm_scaffold_426_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14562..16673
DNA (2112bp) protein (704aa)
general secretion pathway protein D; K02453 general secretion pathway protein D Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein D id=4806967 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
general secretion pathway protein D
13_1_40cm_scaffold_426_17

Not on your lists

comp(16804..17295)
DNA (492bp) protein (164aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN29686.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
two component LuxR family transcriptional regulator id=14430532 bin=bin3_NC10 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
LuxR family two component transcriptional regulator
13_1_40cm_scaffold_426_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17707..18621)
DNA (915bp) protein (305aa)
enoyl-CoA hydratase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=4793456 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_scaffold_426_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18646..19206)
DNA (561bp) protein (187aa)
Isochorismatase hydrolase id=4433401 bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isochorismatase hydrolase Tax=GWC2_Rokubacteria_70_16_curated
isochorismatase hydrolase
13_1_40cm_scaffold_426_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19209..20465)
DNA (1257bp) protein (419aa)
Major facilitator superfamily transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Major facilitator superfamily transporter id=3293768 bin=GWC2_Methylomirabilis_70_24 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
major facilitator protein
13_1_40cm_scaffold_426_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20523..21305
DNA (783bp) protein (261aa)
btpA; photosystem I biogenesis protein; K06971 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Photosystem I assembly BtpA id=4048103 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
photosystem I assembly BtpA
13_1_40cm_scaffold_426_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21295..22425
DNA (1131bp) protein (377aa)
glycosyl hydrolase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] Tax=GWA2_Rokubacteria_73_35_curated
glycoside hydrolase family 3 domain-containing protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] id=14627915 bin=bin7_NC10_sister species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
glycoside hydrolase
13_1_40cm_scaffold_426_23
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(22459..23010)
DNA (552bp) protein (184aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QU0_SYMTH
3-oxoacyl-ACP reductase
13_1_40cm_scaffold_426_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23236..24150)
DNA (915bp) protein (305aa)
rbsK; ribokinase (EC:2.7.1.15); K00852 ribokinase [EC:2.7.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rbsK; ribokinase (EC:2.7.1.15)
Ribokinase id=4048097 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia multivorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_426_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24132..25031)
DNA (900bp) protein (300aa)
inosine-uridine preferring nucleoside hydrolase Tax=GWA2_Rokubacteria_73_35_curated
Inosine-uridine preferring nucleoside hydrolase id=3968020 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
inosine-uridine preferring nucleoside hydrolase
13_1_40cm_scaffold_426_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

25152..25322
DNA (171bp) protein (57aa)
id=3968019 Tax=GWA2_Rokubacteria_70_23_curated
id=3968019 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_426_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25312..26577)
DNA (1266bp) protein (422aa)
acetyl-CoA hydrolase (EC:2.8.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyl-CoA hydrolase (EC:2.8.3.-) id=14627910 bin=bin7_NC10_sister species=Anaerostipes caccae genus=Anaerostipes taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyl-CoA hydrolase (EC:2.8.3.-)
13_1_40cm_scaffold_426_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

26798..27562
DNA (765bp) protein (255aa)
3-oxoacyl-[acyl-carrier-protein] reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative 3-oxoacyl-[acyl-carrier-protein] reductase id=4048086 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_426_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27575..28009
DNA (435bp) protein (145aa)
Endoribonuclease L-PSP id=4048084 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative endoribonuclease, translation initiation inhibitor (modular protein) Tax=GWA2_Rokubacteria_73_35_curated
putative endoribonuclease, translation initiation inhibitor (modular protein)
13_1_40cm_scaffold_426_30
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28149..28442
DNA (294bp) protein (98aa)
Amino acid adenylation domain-containing protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z5Y5_9BRAD
amino acid adenylation domain-containing protein
Amino acid adenylation domain-containing protein {ECO:0000313|EMBL:BAM88923.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;"
Displaying items 1-30 of 47 in total

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