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13_1_40cm_scaffold_513

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_513_1
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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1..549
DNA (549bp) protein (183aa)
acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003656D0F
acyl-CoA dehydrogenase
13_1_40cm_scaffold_513_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(693..1946)
DNA (1254bp) protein (418aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_40cm_scaffold_513_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1957..3162)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000368081C
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein
13_1_40cm_scaffold_513_4
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3270..4649)
DNA (1380bp) protein (460aa)
Amidohydrolase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XQD6_SORCE
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
amidohydrolase
13_1_40cm_scaffold_513_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4764..5513)
DNA (750bp) protein (250aa)
aldo/keto reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
aldo/keto reductase id=14627748 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
aldo/keto reductase
13_1_40cm_scaffold_513_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5677..6669
DNA (993bp) protein (331aa)
Exported protein n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KVM9_RHOSK
aliphatic sulfonates family abc transporter, periplasmic ligand-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_cur
exported protein
13_1_40cm_scaffold_513_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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6795..7454
DNA (660bp) protein (220aa)
sulfonate ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI000366BAFA
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Taurine transport system permease protein TauC
13_1_40cm_scaffold_513_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7580..8350
DNA (771bp) protein (257aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Rhodopseudomonas palustris RepID=B3QKN5_RHOPT
inner membrane component of binding-protein-dependent transport system Tax=RBG_16_Betaproteobacteria_64_18_curated
taurine ABC transporter permease
13_1_40cm_scaffold_513_9
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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8356..9099
DNA (744bp) protein (248aa)
ABC transporter related n=1 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P984_METFA
ABC transporter releated protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
nitrate transporter protein CmpC
13_1_40cm_scaffold_513_10
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9225..9497)
DNA (273bp) protein (91aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) Tax=RBG_16_Gamma2_60_9_curated
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031846E1
13_1_40cm_scaffold_513_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(9517..10689)
DNA (1173bp) protein (391aa)
ABC-type branched-chain amino acid transport system, periplasmic component id=2475303 bin=GWC2_Methylomirabilis_70_16 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
branched-chain amino acid ABC transporter substrate-binding protein
13_1_40cm_scaffold_513_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10782..11720)
DNA (939bp) protein (313aa)
Oligopeptide ABC transporter, permease protein id=2476250 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
oligopeptide ABC transporter, permease protein
13_1_40cm_scaffold_513_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11717..12658)
DNA (942bp) protein (314aa)
Oligopeptide ABC transporter, permease protein id=2476252 bin=GWA2_Methylomirabilis_73_35 species=Ruegeria pomeroyi genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
oligopeptide ABC transporter, permease protein
13_1_40cm_scaffold_513_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12729..14324)
DNA (1596bp) protein (532aa)
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
13_1_40cm_scaffold_513_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14614..16758)
DNA (2145bp) protein (715aa)
cell division protein FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cell division protein id=4104868 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA translocase FtsK
13_1_40cm_scaffold_513_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16758..18428)
DNA (1671bp) protein (557aa)
metallo-beta-lactamase superfamily hydrolase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease J 1 (RNase J1) id=2399877 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase
13_1_40cm_scaffold_513_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18612..18824)
DNA (213bp) protein (71aa)
M24/M37 family peptidase (EC:3.4.-.-)
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Peptidase M23B id=2399879 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_513_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(19770..20555)
DNA (786bp) protein (262aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase A id=2399881 bin=GWA2_Methylomirabilis_73_35 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dimethyladenosine transferase
13_1_40cm_scaffold_513_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20552..21178)
DNA (627bp) protein (209aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWA2_Rokubacteria_73_35_curated
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=2399883 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_513_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21175..23106)
DNA (1932bp) protein (644aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA polymerase id=2399886 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase I
Displaying 20 items

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