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13_1_40cm_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_6_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..622
DNA (621bp) protein (207aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
type II secretion system protein E; K02652 type IV pilus assembly protein PilB id=14625671 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
type II secretion system protein E
13_1_40cm_scaffold_6_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

670..825
DNA (156bp) protein (52aa)
id=3014925 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_6_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

822..2225
DNA (1404bp) protein (468aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_scaffold_6_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2200..2799)
DNA (600bp) protein (200aa)
Polysaccharide deacetylase id=3670144 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polysaccharide deacetylase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_6_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2845..3993
DNA (1149bp) protein (383aa)
putative glycosyltransferase (EC:2.4.-.-); K14597 chlorobactene glucosyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glycosyltransferase (EC:2.4.-.-)
Glycosyl transferase family 2 n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SA64_9CHLR
13_1_40cm_scaffold_6_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3972..4598)
DNA (627bp) protein (209aa)
id=4289999 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4289999 Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_6_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4834..5424
DNA (591bp) protein (197aa)
id=4290000 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4290000 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_6_8
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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5490..5918
DNA (429bp) protein (143aa)
NUDIX hydrolase n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U668_OCEP5
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADR35941.1}; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 1497
13_1_40cm_scaffold_6_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6028..6852)
DNA (825bp) protein (275aa)
amidohydrolase 2 id=14627726 bin=bin7_NC10_sister species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2 Tax=CSP1_6_Rokubacteria
amidohydrolase 2
13_1_40cm_scaffold_6_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6849..7406)
DNA (558bp) protein (186aa)
methylated-DNA--protein-cysteine methyltransferase id=14626944 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase Tax=CSP1_6_Rokubacteria
methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_scaffold_6_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7462..8250
DNA (789bp) protein (263aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WBV7_BACSK
13_1_40cm_scaffold_6_12
R_SM2F11_43_23, SM2F11, Bacteria

Not on your lists

comp(8938..9366)
DNA (429bp) protein (143aa)
Large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RIFCSPHIGHO2_01_FULL_SM2F11_43_23_curated
Large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel id=14623096 bin=bin5_DeltaP species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
mechanosensitive ion channel protein MscL
13_1_40cm_scaffold_6_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9360..11681)
DNA (2322bp) protein (774aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_6_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11753..12676
DNA (924bp) protein (308aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
13_1_40cm_scaffold_6_15
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..13099)
DNA (417bp) protein (139aa)
Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LTH7_SYNAS
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
13_1_40cm_scaffold_6_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13150..13608
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBI8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38109.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
thioesterase superfamily protein
13_1_40cm_scaffold_6_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13671..14321)
DNA (651bp) protein (217aa)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_6_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14514..14732)
DNA (219bp) protein (73aa)
cytoplasmic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4894273 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
13_1_40cm_scaffold_6_19
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14852..15460
DNA (609bp) protein (203aa)
Response regulator id=4574601 bin=GWC2_Deltaproteobacteria_55_46 species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
two component system response regulator Tax=GWC2_Deltaproteobacteria_55_46b_curated
response regulator receiver protein
13_1_40cm_scaffold_6_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15460..19623
DNA (4164bp) protein (1388aa)
two-component sensor histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Multi-sensor signal transduction histidine kinase id=4307405 bin=GWC2_Methylomirabilis_70_16 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
multi-sensor signal transduction histidine kinase
13_1_40cm_scaffold_6_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19623..20003
DNA (381bp) protein (127aa)
Transcriptional regulatory protein id=4558721 bin=GWA2_Methylomirabilis_73_35 species=ACD65 genus=ACD65 taxon_order=ACD65 taxon_class=ACD65 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yycF; transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein
13_1_40cm_scaffold_6_22
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

20036..20491
DNA (456bp) protein (152aa)
Flp pilus assembly protein TadD n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJY3_SINAD
hypothetical protein Tax=RBG_16_NC10_65_8_curated
Flp pilus assembly protein TadD
13_1_40cm_scaffold_6_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20515..22083
DNA (1569bp) protein (523aa)
family 3 adenylate cyclase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Family 3 adenylate cyclase id=4845186 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 3 adenylate cyclase
13_1_40cm_scaffold_6_24
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22157..22525
DNA (369bp) protein (123aa)
Sensor protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FNL8_STIAD
sensor protein
Sensor protein {ECO:0000313|EMBL:ADO68097.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella
13_1_40cm_scaffold_6_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22539..23525
DNA (987bp) protein (329aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626058 bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_6_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23539..24546
DNA (1008bp) protein (336aa)
D-cysteine desulfhydrase (EC:3.5.99.7); K05396 D-cysteine desulfhydrase [EC:4.4.1.15] Tax=GWA2_Rokubacteria_73_35_curated
D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein (EC:3.5.99.7)
D-cysteine desulfhydrase id=3474352 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_6_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24562..25413
DNA (852bp) protein (284aa)
Alpha/beta hydrolase fold protein id=3474252 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein Tax=GWA2_Rokubacteria_73_35_curated
alpha/beta hydrolase
13_1_40cm_scaffold_6_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25429..25746
DNA (318bp) protein (106aa)
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese-like protein Tax=GWA2_Rokubacteria_73_35_curated
sulfurtransferase
13_1_40cm_scaffold_6_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25746..26522
DNA (777bp) protein (259aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_6_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26519..27268
DNA (750bp) protein (250aa)
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=GWA2_Rokubacteria_73_35_curated
HAD family hydrolase
Displaying items 1-30 of 50 in total

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