ggKbase home page

13_1_40cm_scaffold_909

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_909_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(26..2449)
DNA (2424bp) protein (808aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=14627866 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phenylalanyl-tRNA synthetase subunit beta
13_1_40cm_scaffold_909_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2545..2877
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_909_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2745..3764)
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
13_1_40cm_scaffold_909_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(3916..4272)
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L20
13_1_40cm_scaffold_909_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(4287..4484)
DNA (198bp) protein (66aa)
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L35 id=3919663 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Megamonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L35
13_1_40cm_scaffold_909_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4504..4974)
DNA (471bp) protein (157aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-3
13_1_40cm_scaffold_909_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5068..6861)
DNA (1794bp) protein (598aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWC2_Rokubacteria_70_16_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4178158 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_909_trna_1
unknown

Not on your lists

comp(6886..6957)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_909_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7031..7993)
DNA (963bp) protein (321aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=4825345 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
OmpA/MotB
13_1_40cm_scaffold_909_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8022..9038)
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
13_1_40cm_scaffold_909_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(9035..10054)
DNA (1020bp) protein (340aa)
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) Tax=CSP1_6_Rokubacte
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
13_1_40cm_scaffold_909_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10255..11019)
DNA (765bp) protein (255aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_909_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11016..12425)
DNA (1410bp) protein (470aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14625475 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidase
13_1_40cm_scaffold_909_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12709..13746
DNA (1038bp) protein (346aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_909_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13793..15019)
DNA (1227bp) protein (409aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding protein
13_1_40cm_scaffold_909_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15016..15516)
DNA (501bp) protein (167aa)
Crp/Fnr family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding domain-containing protein
13_1_40cm_scaffold_909_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15532..15765)
DNA (234bp) protein (78aa)
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_909_17
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(15823..16644)
DNA (822bp) protein (274aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
OmpA/MotB domain protein id=3338598 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_scaffold_909_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17072..18898)
DNA (1827bp) protein (609aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amino acid permease-associated region id=4193626 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid permease-associated protein
13_1_40cm_scaffold_909_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19046..19342
DNA (297bp) protein (99aa)
hypothetical protein id=3779761 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_909_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

19344..20864
DNA (1521bp) protein (507aa)
kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation (EC:2.7.1.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
Sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJR3_9BACT
13_1_40cm_scaffold_909_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20857..21549
DNA (693bp) protein (231aa)
kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) id=3779763 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family)
13_1_40cm_scaffold_909_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21528..21755)
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_909_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22012..22263
DNA (252bp) protein (84aa)
id=2868268 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=2868268 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Protein of unknown function (DUF1344)
13_1_40cm_scaffold_909_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(22313..23038)
DNA (726bp) protein (242aa)
Peptidase S1 and S6, chymotrypsin/Hap id=4062227 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase S1 and S6, chymotrypsin/Hap Tax=GWA2_Rokubacteria_70_23_curated
putative lipoprotein
13_1_40cm_scaffold_909_25
Geomicrobium sp. JCM 19038, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23164..23406
DNA (243bp) protein (81aa)
Binding-protein-dependent transporters inner membrane component n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DHU3_9BACL
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:GAK07747.1}; TaxID=1460635 species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19038.;"
oligopeptide transport system permease AppB
13_1_40cm_scaffold_909_26
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23609..24751
DNA (1143bp) protein (381aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ED2137
vitamin-B12 independent methionine synthase
13_1_40cm_scaffold_909_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24790..25251)
DNA (462bp) protein (154aa)
Amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
Glutamyl-tRNA(Gln) amidotransferase subunit A id=4793452 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
13_1_40cm_scaffold_909_28
R_NC10_66_22, NC10, Bacteria

Not on your lists

25519..25749
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 29 items

View Taxonomy