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13_1_40cm_scaffold_1164

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1164_1
unknown

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comp(2..139)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_scaffold_1164_2
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(142..783)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DZP3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ40981.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum DSM 11
hypothetical protein
13_1_40cm_scaffold_1164_3
Aureococcus anophagefferens, Aureococcus, Pelagomonadales, Pelagophyceae, Eukaryota

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comp(1134..1760)
DNA (627bp) protein (209aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens RepID=F0Y525_AURAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGB09872.1}; Flags: Fragment;; TaxID=44056 species="Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus.;" source="Aureococcus anop
13_1_40cm_scaffold_1164_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

2922..3380
DNA (459bp) protein (153aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WPX7_9EURY
enoyl-CoA hydratase/carnithine racemase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
enoyl-CoA hydratase/carnithine racemase
13_1_40cm_scaffold_1164_5
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3380..4189
DNA (810bp) protein (270aa)
Carboxylyase-related protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1N6_9BURK
vdcc protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Vdcc protein
13_1_40cm_scaffold_1164_6
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4186..4974
DNA (789bp) protein (263aa)
Carboxylase {ECO:0000313|EMBL:KJS48643.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
Carboxylyase-related protein id=2018825 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Vdcc protein
13_1_40cm_scaffold_1164_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4971..5957
DNA (987bp) protein (329aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=1782162 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_scaffold_1164_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5954..6790
DNA (837bp) protein (279aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXN0_9SYNE
nitrate/sulfonate/bicarbonate ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_scaffold_1164_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6800..7639
DNA (840bp) protein (280aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXN0_9SYNE
nitrate/sulfonate/bicarbonate ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_scaffold_1164_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7649..8485
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00037AA3E7
nitrate transporter protein CmpC; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
nitrate/sulfonate/bicarbonate ABC transporter ATPase
13_1_40cm_scaffold_1164_11
unknown

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comp(8503..8757)
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_scaffold_1164_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(8792..9520)
DNA (729bp) protein (243aa)
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWA2_Rokubacteria_70_23_curated
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_scaffold_1164_13
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(9729..11105)
DNA (1377bp) protein (459aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHY4_ANADF
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RBG_16_NC10_65_8_curated
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_1164_14
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(11102..12772)
DNA (1671bp) protein (557aa)
putative sensor protein PilS (EC:2.7.13.3); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
Signal transduction histidine kinase id=1891807 bin=GWA2_Elusimicrobia_69_24 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_scaffold_1164_15
unknown

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12966..13265
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_scaffold_1164_16
unknown

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13407..13514
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_scaffold_1164_17
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(13657..14481)
DNA (825bp) protein (275aa)
Major facilitator superfamily MFS_1 id=3878088 bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
major facilitator transporter Tax=CSP1_4_Chloroflexi
major facilitator transporter
13_1_40cm_scaffold_1164_18
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14548..14913)
DNA (366bp) protein (122aa)
transport membrane protein Tax=RBG_13_Bathyarchaeota_52_12_curated
major facilitator transporter id=14628359 bin=bin8_Chloro species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_scaffold_1164_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14913..15881)
DNA (969bp) protein (323aa)
Electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Electron transfer flavoprotein alpha subunit id=2043727 bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Electron transfer flavoprotein alpha subunit
13_1_40cm_scaffold_1164_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15896..16693)
DNA (798bp) protein (266aa)
electron transfer flavoprotein subunit alpha/beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Electron transfer flavoprotein alpha/beta-subunit id=2043725 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Electron transfer flavoprotein alpha/beta-subunit
13_1_40cm_scaffold_1164_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16672..16872)
DNA (201bp) protein (67aa)
id=2043724 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
id=2043724 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_scaffold_1164_22
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16887..17612)
DNA (726bp) protein (242aa)
Probable phenylacetic acid degradation protein paaA id=2043722 bin=GWD2_Deltaproteobacteria_55_8 species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phenylacetic acid degradation protein paaA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
phenylacetic acid degradation protein paaA
13_1_40cm_scaffold_1164_23
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(17624..18244)
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TLV3_DESML
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
transcriptional regulator, MerR
13_1_40cm_scaffold_1164_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18314..18667)
DNA (354bp) protein (118aa)
transcriptional modulator of MazE/toxin, MazF; K07171 mRNA interferase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Growth inhibitor n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D493_PELTS
MazF; growth inhibitor
13_1_40cm_scaffold_1164_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18667..18909)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=unclassified candidate division OP9 RepID=UPI0003633562
SpoVT/AbrB domain-containing protein; K07172 antitoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SpoVT/AbrB domain-containing protein
13_1_40cm_scaffold_1164_26
unknown

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comp(19033..19110)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 26 items

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