ggKbase home page

13_1_40cm_scaffold_1514

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1514_1
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1629
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F555_9ALTE
hypothetical protein Tax=RBG_13_Deltaproteobacteria_47_9_curated
hypothetical protein
13_1_40cm_scaffold_1514_2
unknown

Not on your lists

1666..2016
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_40cm_scaffold_1514_3
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

2040..2291
DNA (252bp) protein (84aa)
streptogramin lyase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
13_1_40cm_scaffold_1514_4
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

2312..3664
DNA (1353bp) protein (451aa)
Lyase-like protein n=1 Tax=Glaciecola sp. (strain 4H-3-7+YE-5) RepID=F4AMD9_GLAS4
lyase -like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
lyase -like protein
13_1_40cm_scaffold_1514_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3673..4053)
DNA (381bp) protein (127aa)
id=14626280 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626280 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_1514_6
unknown

Not on your lists

4150..4344
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_scaffold_1514_7
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4372..5352)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000371A665
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH08917.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
13_1_40cm_scaffold_1514_8
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5376..6506
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ED2137
Enterotoxin {ECO:0000313|EMBL:KJS08225.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
vitamin-B12 independent methionine synthase
13_1_40cm_scaffold_1514_9
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6507..7349)
DNA (843bp) protein (281aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) id=14630043 bin=bin8_Chloro species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
xthA; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III {ECO:0000313|EMBL:AKF09296.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandar
13_1_40cm_scaffold_1514_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7354..8586)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J516_NOSP7
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
13_1_40cm_scaffold_1514_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8913..10352
DNA (1440bp) protein (480aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Thermus thermophilus JL-18 RepID=H9ZUB6_THETH
ABC-type dipeptide transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_scaffold_1514_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10418..11983
DNA (1566bp) protein (522aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Thermus thermophilus JL-18 RepID=H9ZUB6_THETH
ABC-type dipeptide transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_scaffold_1514_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11988..12962
DNA (975bp) protein (325aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Halobacillus sp. BAB-2008 RepID=L5NCG4_9BACI
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1514_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12970..13941
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036E5B2B
ABC transporter; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1514_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13934..14767)
DNA (834bp) protein (278aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2S1G7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW92329.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
transcriptional regulator
13_1_40cm_scaffold_1514_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14853..15254
DNA (402bp) protein (134aa)
Phenylacetic acid degradation-related protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX48_RHOP2
phenylacetic acid degradation-like protein Tax=GWA2_Rokubacteria_73_35_curated
phenylacetic acid degradation-like protein
13_1_40cm_scaffold_1514_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15251..16183
DNA (933bp) protein (311aa)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=2216084 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
13_1_40cm_scaffold_1514_18
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

16307..17764
DNA (1458bp) protein (486aa)
Beta-lactamase domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IXH5_9GAMM
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
beta-lactamase domain-containing protein
13_1_40cm_scaffold_1514_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17854..18765)
DNA (912bp) protein (304aa)
ABC-type transporter, permease component: PepT family id=3428795 bin=GWC2_Methylomirabilis_70_16 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dppC; PepT family ABC transporter permease Tax=GWC2_Rokubacteria_70_16_curated
dppC; PepT family ABC transporter permease
13_1_40cm_scaffold_1514_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18769..18966)
DNA (198bp) protein (66aa)
Binding-protein-dependent transport systems inner membrane component id=3428797 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein {ECO:0000313|EMBL:ETX01221.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
dipeptide/oligopeptide/nickel ABC transporter permease
Displaying 20 items

View Taxonomy