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13_1_40cm_scaffold_1707

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1707_1
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..285)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI000375A2C7
Di-heme cytochrome c peroxidase Tax=RBG_16_Deltaproteobacteria_49_23_curated
di-heme cytochrome-c peroxidase
13_1_40cm_scaffold_1707_2
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1105..1764)
DNA (660bp) protein (220aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI0002E4E77D
asparagine synthase Tax=RBG_16_Desulfobacca_60_12_curated
13_1_40cm_scaffold_1707_3
unknown

Not on your lists

comp(1918..2202)
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_scaffold_1707_4
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2350..3399)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI000371E4BA
hypothetical protein Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
hypothetical protein
13_1_40cm_scaffold_1707_5
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3401..4030)
DNA (630bp) protein (210aa)
Electron transport protein SCO1/SenC n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3ISK3_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EGW22373.1}; Flags: Precursor;; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloba
hypothetical protein
13_1_40cm_scaffold_1707_6
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4056..5183)
DNA (1128bp) protein (376aa)
bilirubin oxidase (EC:1.3.3.5)
Bilirubin oxidase {ECO:0000313|EMBL:ACB32344.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ACB32344.1};; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Lept
Bilirubin oxidase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5Z7_LEPCP
13_1_40cm_scaffold_1707_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6111..6899
DNA (789bp) protein (263aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_scaffold_1707_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6911..7969
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_scaffold_1707_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8697..9101
DNA (405bp) protein (135aa)
pts; 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4534446 bin=GWF2_Methylomirabilis_70_14 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1707_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9098..9679
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_1_40cm_scaffold_1707_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9676..10395
DNA (720bp) protein (240aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_scaffold_1707_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10436..10762
DNA (327bp) protein (109aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
13_1_40cm_scaffold_1707_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10783..11454
DNA (672bp) protein (224aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein
13_1_40cm_scaffold_1707_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11420..12829
DNA (1410bp) protein (470aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
13_1_40cm_scaffold_1707_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12898..14277
DNA (1380bp) protein (460aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_1_40cm_scaffold_1707_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14274..15716
DNA (1443bp) protein (481aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator id=4232767 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_40cm_scaffold_1707_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15713..17278
DNA (1566bp) protein (522aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exported protein id=3824666 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1707_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17345..18235)
DNA (891bp) protein (297aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1707_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18521..19681)
DNA (1161bp) protein (387aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
anti-FecI sigma factor FecR
13_1_40cm_scaffold_1707_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19846..20475)
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase id=4866643 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1707_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20590..21936)
DNA (1347bp) protein (449aa)
Mg/Co/Ni transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
magnesium transporter; K06213 magnesium transporter id=14626380 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Mg/Co/Ni transporter
13_1_40cm_scaffold_1707_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21933..24707)
DNA (2775bp) protein (925aa)
aspartate ammonia-lyase (EC:4.2.1.2); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Fumarate hydratase class II id=4866639 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1707_23
unknown

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comp(24723..24992)
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_40cm_scaffold_1707_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25115..25456)
DNA (342bp) protein (114aa)
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) id=5032673 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trehalose-6-phosphate synthase
13_1_40cm_scaffold_1707_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25491..27302)
DNA (1812bp) protein (604aa)
Alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) id=4183572 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha,alpha-trehalose-phosphate synthase
13_1_40cm_scaffold_1707_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27331..28530)
DNA (1200bp) protein (400aa)
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1)
Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (APGAM) id=3020272 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1707_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28621..29523)
DNA (903bp) protein (301aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase id=3020269 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
13_1_40cm_scaffold_1707_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29684..30073
DNA (390bp) protein (130aa)
Putative uncharacterized protein id=3020266 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_1707_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

30291..30425
DNA (135bp) protein (45aa)
id=3742536 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_1707_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30429..30809)
DNA (381bp) protein (127aa)
id=3020265 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3020265 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 39 in total

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