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13_1_40cm_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_194_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1..321)
DNA (321bp) protein (107aa)
ABC transporter related Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter-related protein id=3348592 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tauB; sulfonate/nitrate/taurine transport system ATP-binding protein
13_1_40cm_scaffold_194_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(318..1118)
DNA (801bp) protein (267aa)
ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type transporter, integral membrane subunit id=3348593 bin=GWF2_Methylomirabilis_70_14 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_scaffold_194_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(1160..1654)
DNA (495bp) protein (165aa)
Cupin region n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GV5_POLSJ
heme peroxidase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
13_1_40cm_scaffold_194_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

1755..3893
DNA (2139bp) protein (713aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035EFF67
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_scaffold_194_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3898..4908
DNA (1011bp) protein (337aa)
Putative Aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein id=4827660 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium medicae genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aliphatic sulfonates ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
aliphatic sulfonates ABC transporter substrate-binding protein
13_1_40cm_scaffold_194_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4913..5686
DNA (774bp) protein (258aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (EC:3.6.3.25); K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (EC:3.6.3.25)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component id=4827661 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora viridis genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_194_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5683..6453
DNA (771bp) protein (257aa)
Binding-protein-dependent transport systems inner membrane component id=4827662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative taurine ABC transporter permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative taurine ABC transporter permease protein
13_1_40cm_scaffold_194_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6763..7155
DNA (393bp) protein (131aa)
Taurine transporter subunit ; membrane component of ABC superfamily id=4827663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative taurine ABC transporter permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative taurine ABC transporter permease protein
13_1_40cm_scaffold_194_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7152..7472
DNA (321bp) protein (107aa)
Uncharacterized protein id=4827664 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_194_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7487..8257
DNA (771bp) protein (257aa)
trans-aconitate methyltransferase (EC:2.1.1.144)
Trans-aconitate methyltransferase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D5K4_BRAJP
Trans-aconitate methyltransferase {ECO:0000313|EMBL:BAL12275.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrh
13_1_40cm_scaffold_194_11
unknown

Not on your lists

8392..8703
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_scaffold_194_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8661..9872)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036682F8
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
13_1_40cm_scaffold_194_13
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

10019..10600
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
hypothetical protein id=4733520 bin=GWA2_Elusimicrobia_51_34 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
13_1_40cm_scaffold_194_14
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

10617..11165
DNA (549bp) protein (183aa)
Osmotically inducible protein OsmY n=1 Tax=Enterobacter aerogenes EA1509E RepID=L8BIG2_ENTAE
transport associated protein Tax=CG_Elusi_04
Osmotically inducible protein OsmY
13_1_40cm_scaffold_194_15
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(11233..12693)
DNA (1461bp) protein (487aa)
Histidine kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y637_LEPCP
histidine kinase Tax=RBG_16_NC10_65_8_curated
histidine kinase
13_1_40cm_scaffold_194_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(12857..14356)
DNA (1500bp) protein (500aa)
Transmembrane transport protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VRS9_9RHIZ
putative multidrag resistance protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
major facilitator superfamily protein
13_1_40cm_scaffold_194_17
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14412..14600
DNA (189bp) protein (63aa)
Glutaredoxin n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWU8_CLOA9
Uncharacterized protein {ECO:0000313|EMBL:ETW98310.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glutaredoxin
13_1_40cm_scaffold_194_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14644..15813
DNA (1170bp) protein (390aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Major facilitator superfamily MFS_1 transporter id=4930061 bin=GWA2_Methylomirabilis_73_35 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein
13_1_40cm_scaffold_194_19
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15816..16376)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WZU3_9NOST
Uncharacterized protein {ECO:0000313|EMBL:KIF14294.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
hypothetical protein
13_1_40cm_scaffold_194_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16484..17284
DNA (801bp) protein (267aa)
Alpha/beta hydrolase fold family protein 8 id=3868196 bin=GWC2_Methylomirabilis_70_24 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alpha/beta hydrolase fold protein Tax=GWC2_Rokubacteria_70_16_curated
epoxide hydrolase
13_1_40cm_scaffold_194_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17281..18384
DNA (1104bp) protein (368aa)
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] id=14627216 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase class III
13_1_40cm_scaffold_194_22
unknown

Not on your lists

comp(18485..18691)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_scaffold_194_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18691..19026)
DNA (336bp) protein (112aa)
id=4554997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4554997 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_194_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19081..20037)
DNA (957bp) protein (319aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methylated-DNA--protein-cysteine methyltransferase id=4554993 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_scaffold_194_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20034..20558)
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4029898 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_scaffold_194_26
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20613..21386)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036BA46E
Uncharacterized protein {ECO:0000313|EMBL:ETX02825.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_scaffold_194_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21419..22081
DNA (663bp) protein (221aa)
TENA/THI-4 family; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TENA/THI-4 family id=1746155 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TenA family transcription regulator
13_1_40cm_scaffold_194_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22078..22782
DNA (705bp) protein (235aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA id=3784124 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K07025 putative hydrolase of the HAD superfamily Tax=GWC2_Rokubacteria_70_16_curated
putative hydrolase
13_1_40cm_scaffold_194_29
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

23101..23448
DNA (348bp) protein (116aa)
Putative ABC transporter substrate binding protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZV2_ANATU
putative ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAJ62287.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Ana
13_1_40cm_scaffold_194_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23612..24232
DNA (621bp) protein (207aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidoglycan-associated lipoprotein id=2546000 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 102 in total

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