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13_1_40cm_scaffold_233

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_233_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..319)
DNA (318bp) protein (106aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2)
Carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) id=3847107 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_233_2
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316..1032)
DNA (717bp) protein (239aa)
Nicotinamidase-like amidase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VSA8_9BRAD
Nicotinamidase-like amidase {ECO:0000313|EMBL:EJN09072.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" so
pncA; bifunctional pyrazinamidase/nicotinamidase
13_1_40cm_scaffold_233_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1032..2285)
DNA (1254bp) protein (418aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626658 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_233_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(2299..3009)
DNA (711bp) protein (237aa)
pdhR; GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_cura
transcriptional regulator id=14626765 bin=bin7_NC10_sister species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transcriptional regulator
13_1_40cm_scaffold_233_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3101..4084
DNA (984bp) protein (328aa)
uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=GWA2_Rokubacteria_70_23_curated
Uroporphyrinogen decarboxylase id=4355655 bin=GWF2_Methylomirabilis_70_14 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrinogen decarboxylase
13_1_40cm_scaffold_233_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4081..5574
DNA (1494bp) protein (498aa)
Oligopeptide ABC transporter substrate-binding protein id=3191860 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
oligopeptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_233_7
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5610..5975
DNA (366bp) protein (122aa)
cupin 2 barrel domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Putative uncharacterized protein id=2193858 bin=GWB2_Deltaproteobacteria_65_81 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
cupin
13_1_40cm_scaffold_233_8
Amorphus coralli, Amorphus, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5975..6325
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000381661B
13_1_40cm_scaffold_233_9
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6329..7171
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031FBBB7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ87560.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum
13_1_40cm_scaffold_233_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7178..7645
DNA (468bp) protein (156aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K15977 putative oxidoreductase id=14431357 bin=bin3_NC10 species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_233_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7680..8744)
DNA (1065bp) protein (355aa)
Glycosyl hydrolase, BNR repeat protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46P13_CUPPJ
BNR repeat-containing glycosyl hydrolase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
BNR repeat-containing glycosyl hydrolase
13_1_40cm_scaffold_233_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8741..11062)
DNA (2322bp) protein (774aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=GWA2_Rokubacteria_70_23_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037155A5
13_1_40cm_scaffold_233_13
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11189..12382
DNA (1194bp) protein (398aa)
Extracellular ligand-binding receptor n=1 Tax=Geobacter sp. (strain M18) RepID=E8WUI0_GEOS8
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
extracellular ligand-binding receptor
13_1_40cm_scaffold_233_14
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12398..13279
DNA (882bp) protein (294aa)
Inner-membrane translocator n=3 Tax=Rhodobacter RepID=A3PQM7_RHOS1
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
Inner-membrane translocator precursor
13_1_40cm_scaffold_233_15
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13276..14220
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002ED1D0F
putative high-affinity branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_scaffold_233_16
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14226..14948)
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_scaffold_233_17
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14923..15624)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000321BD9A
livG3; putative branched-chain amino acids ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_233_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(15684..16568)
DNA (885bp) protein (295aa)
Molybdopterin dehydrogenase FAD-binding protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8T3_SPHTD
molybdopterin dehydrogenase FAD-binding protein
Molybdopterin dehydrogenase FAD-binding protein {ECO:0000313|EMBL:ACZ40226.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae
13_1_40cm_scaffold_233_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16565..18940)
DNA (2376bp) protein (792aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein id=3729544 bin=GWF2_Methylomirabilis_70_14 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_233_20
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18937..19428)
DNA (492bp) protein (164aa)
(2Fe-2S)-binding domain-containing protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGF2_THEM7
(2Fe-2S)-binding domain-containing protein
(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:ADU51604.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobac
13_1_40cm_scaffold_233_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19428..19796)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JCY9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE72953.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum
13_1_40cm_scaffold_233_22
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19834..20019)
DNA (186bp) protein (62aa)
UPI0003CF830E related cluster n=1 Tax=unknown RepID=UPI0003CF830E
endoribonuclease L-PSP; K07567 TdcF protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
putative translation initiation inhibitor, yjgF family
Displaying 22 items

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