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13_1_40cm_scaffold_2485

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2485_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2..871
DNA (870bp) protein (290aa)
pyruvate ferredoxin oxidoreductase subunit beta; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyruvate ferredoxin oxidoreductase subunit beta; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] id=24466814 bin=RBG_19FT_COMBO_GAL15_69_19 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
pyruvate ferredoxin oxidoreductase subunit beta (EC:1.2.7.1)
13_1_40cm_scaffold_2485_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

961..1971
DNA (1011bp) protein (337aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=1837243 bin=GWD2_Deltaproteobacteria_55_8 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
conserved exported hypothetical protein
13_1_40cm_scaffold_2485_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1972..2433
DNA (462bp) protein (154aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein id=14626768 bin=bin7_NC10_sister species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2485_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2433..3953
DNA (1521bp) protein (507aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14626767 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2485_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3959..4654
DNA (696bp) protein (232aa)
Integral membrane protein TerC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC43_9BACT
integral membrane protein TerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_2485_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4701..5414
DNA (714bp) protein (238aa)
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator id=14626765 bin=bin7_NC10_sister species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_scaffold_2485_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5849..8560
DNA (2712bp) protein (904aa)
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] id=14626757 bin=bin7_NC10_sister species=Methanohalophilus mahii genus=Methanohalophilus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1)
13_1_40cm_scaffold_2485_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8553..9440
DNA (888bp) protein (296aa)
HOGA1, C10orf65; 4-hydroxy-2-oxoglutarate aldolase 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
HOGA1, C10orf65; 4-hydroxy-2-oxoglutarate aldolase 1 id=24519537 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gallus gallus genus=Gallus taxon_order=Galliformes taxon_class=Aves phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dihydrodipicolinate synthase/N-acetylneuraminate lyase
13_1_40cm_scaffold_2485_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9591..11141
DNA (1551bp) protein (517aa)
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ilvB; acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] id=14626755 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
ilvB; acetolactate synthase large subunit, biosynthetic type (EC:2.2.1.6)
13_1_40cm_scaffold_2485_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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11141..11719
DNA (579bp) protein (193aa)
ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) id=3910683 bin=GWF2_Methylomirabilis_70_14 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetolactate synthase
13_1_40cm_scaffold_2485_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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11741..12745
DNA (1005bp) protein (335aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86) id=14626753 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
13_1_40cm_scaffold_2485_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12748..13377
DNA (630bp) protein (210aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
psd; phosphatidylserine decarboxylase (EC:4.1.1.65) id=14626752 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
13_1_40cm_scaffold_2485_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13418..14215
DNA (798bp) protein (266aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
CDP-diacylglycerol/serine O-phosphatidyltransferase id=4827335 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
CDP-diacylglycerol--serine O-phosphatidyltransferase
13_1_40cm_scaffold_2485_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14230..15771
DNA (1542bp) protein (514aa)
leuA; 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) (EC:2.3.3.13) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] id=14626750 bin=bin7_NC10_sister species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
leuA; 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) (EC:2.3.3.13)
13_1_40cm_scaffold_2485_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15783..16883
DNA (1101bp) protein (367aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85)
3-isopropylmalate dehydrogenase id=4703436 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2485_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16883..17890
DNA (1008bp) protein (336aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=4827332 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2485_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17975..18220
DNA (246bp) protein (82aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4703405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2485_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18316..18972
DNA (657bp) protein (219aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA pseudouridine synthase A (EC:5.4.99.12)
Pseudouridylate synthase I id=4703404 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2485_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19019..19789
DNA (771bp) protein (257aa)
formate dehydrogenase family accessory protein (FdhD) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative formate dehydrogenase family accessory protein (FdhD) id=4703403 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein (FdhD)
13_1_40cm_scaffold_2485_20
unknown

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comp(19761..20192)
DNA (432bp) protein (144aa)

This feature has no annotations

13_1_40cm_scaffold_2485_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20227..20499
DNA (273bp) protein (91aa)
id=3227803 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=24540628 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_2485_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20626..21204
DNA (579bp) protein (193aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=24540627 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=GWA2_Rokubacteria_73_35_curated
formate dehydrogenase
13_1_40cm_scaffold_2485_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

21253..23163
DNA (1911bp) protein (637aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=24540626 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase
Displaying 23 items

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