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13_1_40cm_scaffold_2869

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2869_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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2..394
DNA (393bp) protein (131aa)
id=14625963 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14625963 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_2869_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(488..1054)
DNA (567bp) protein (189aa)
metal dependent phosphohydrolase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWA2_Rokubacteria_73_35_curated
Metal dependent phosphohydrolase id=1709630 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_1_40cm_scaffold_2869_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1077..1820)
DNA (744bp) protein (248aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin synthase id=1709629 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin 5'-phosphate synthase
13_1_40cm_scaffold_2869_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1966..3336
DNA (1371bp) protein (457aa)
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] id=1709628 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2869_5
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

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comp(3672..4100)
DNA (429bp) protein (143aa)
PAS domain S-box n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WXP2_9NOST
PAS domain S-box
PAS domain S-box {ECO:0000313|EMBL:AFZ24579.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
13_1_40cm_scaffold_2869_6
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(4164..4571)
DNA (408bp) protein (136aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W2P3_9CYAN
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:AFZ14618.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PC
13_1_40cm_scaffold_2869_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4614..6080)
DNA (1467bp) protein (489aa)
propionyl-CoA carboxylase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative propionyl-CoA carboxylase beta subunit id=4243671 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propionyl-CoA carboxylase subunit beta
13_1_40cm_scaffold_2869_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6077..7126)
DNA (1050bp) protein (350aa)
RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
RNA polymerase sigma-E factor id=1709623 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma-e factor
13_1_40cm_scaffold_2869_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7223..7747)
DNA (525bp) protein (175aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=4207270 bin=GWC2_Methylomirabilis_70_24 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_2869_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7763..8503)
DNA (741bp) protein (247aa)
Zinc/iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Zinc/iron transporter id=14627800 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Zinc/iron transporter
13_1_40cm_scaffold_2869_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8522..10216
DNA (1695bp) protein (565aa)
General secretion pathway protein E (Type II traffic warden ATPase) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E (Type II traffic warden ATPase) id=14627801 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
General secretion pathway protein E (Type II traffic warden ATPase)
13_1_40cm_scaffold_2869_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10224..11435
DNA (1212bp) protein (404aa)
gspF; general secretory pathway component, cryptic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gspF; general secretory pathway component, cryptic id=14627802 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
13_1_40cm_scaffold_2869_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11435..11995
DNA (561bp) protein (187aa)
General secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudopilin, cryptic, general secretion pathway id=3269001 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gspG; pseudopilin, cryptic, general secretion pathway
13_1_40cm_scaffold_2869_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11980..12420
DNA (441bp) protein (147aa)
xpsH; general secretion pathway protein H; K02457 general secretion pathway protein H Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
General secretion pathway protein H id=3269002 bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein H
13_1_40cm_scaffold_2869_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12417..12884
DNA (468bp) protein (156aa)
general secretion pathway protein H; K02458 general secretion pathway protein I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative General secretion pathway protein I, GspI (Modular protein) id=3269003 bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein I
13_1_40cm_scaffold_2869_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12884..13498
DNA (615bp) protein (205aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gspJ2; protein GspJ2; K02459 general secretion pathway protein J id=14628120 bin=bin7_NC10_sister species=Methylohalobius crimeensis genus=Methylohalobius taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2869_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13498..13767
DNA (270bp) protein (90aa)
General secretion pathway protein K id=4806971 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
general secretion pathway protein K; K02460 general secretion pathway protein K Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 17 items

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