ggKbase home page

13_1_40cm_scaffold_2944

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2944_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..943
DNA (942bp) protein (314aa)
Blr6118 protein id=3732187 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_2944_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1130..2197)
DNA (1068bp) protein (356aa)
HNH endonuclease id=3240863 bin=GWC2_Methylomirabilis_70_16 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
HNH endonuclease Tax=GWC2_Rokubacteria_70_16_curated
HNH endonuclease
13_1_40cm_scaffold_2944_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2386..3987
DNA (1602bp) protein (534aa)
Putative permease (Major facilitator superfamily) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7Q2_UNCMA
major facilitator superfamily permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
major facilitator superfamily permease
13_1_40cm_scaffold_2944_4
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4019..5227)
DNA (1209bp) protein (403aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:CDS48710.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CDS48710.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CDS
amidase (EC:3.5.1.4)
Amidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB05_9BRAD
13_1_40cm_scaffold_2944_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5467..6009)
DNA (543bp) protein (181aa)
hypothetical protein; K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FEDF0E
3-hydroxybutyryl-CoA dehydratase
13_1_40cm_scaffold_2944_6
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6024..7217)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036217C3
CoA-transferase {ECO:0000313|EMBL:ETR76211.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
13_1_40cm_scaffold_2944_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7473..8000
DNA (528bp) protein (176aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] id=14625871 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Uncharacterized protein {ECO:0000313|EMBL:ETX08573.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_scaffold_2944_8
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8022..8786)
DNA (765bp) protein (255aa)
Rhomboid family protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAN7_ANADF
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:ABS25783.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_1_40cm_scaffold_2944_9
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8968..9786)
DNA (819bp) protein (273aa)
Putative F420-dependent oxidoreductase, MSMEG_3544 family id=2767983 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:KIE52225.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
13_1_40cm_scaffold_2944_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9783..9938)
DNA (156bp) protein (52aa)
N-formylglutamate deformylase (EC:3.5.1.68); K01458 N-formylglutamate deformylase [EC:3.5.1.68] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_2944_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9938..10582)
DNA (645bp) protein (215aa)
N-formylglutamate deformylase (EC:3.5.1.68); K01458 N-formylglutamate deformylase [EC:3.5.1.68] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-formylglutamate deformylase (EC:3.5.1.68)
N-formylglutamate deformylase n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=Q5FNW4_GLUOX
13_1_40cm_scaffold_2944_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

10606..11511
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036687D8
5'-3' exonuclease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
5'-3' exonuclease
13_1_40cm_scaffold_2944_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11508..12953)
DNA (1446bp) protein (482aa)
EmrB/QacA family drug resistance transporter Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Drug resistance transporter, EmrB/QacA subfamily id=1740938 bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MFS transporter
13_1_40cm_scaffold_2944_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12982..13626
DNA (645bp) protein (215aa)
MutT/nudix family protein id=4388224 bin=GWA2_Methylomirabilis_73_35 species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MutT/nudix family protein Tax=GWA2_Rokubacteria_73_35_curated
MutT/nudix family protein
13_1_40cm_scaffold_2944_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13647..14585
DNA (939bp) protein (313aa)
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_70_23_curated
Short-chain dehydrogenase/reductase SDR id=3951922 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_2944_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14582..15058
DNA (477bp) protein (159aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=GWA2_Rokubacteria_70_23_curated
Protein tyrosine phosphatase id=4887997 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
low molecular weight protein-tyrosine-phosphatase
13_1_40cm_scaffold_2944_17
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15009..15863)
DNA (855bp) protein (285aa)
Xylose isomerase-like enzyme n=1 Tax=Pseudomonas sp. GM17 RepID=J3E3T4_9PSED
xylose isomerase
Uncharacterized protein {ECO:0000313|EMBL:AJO80798.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M
13_1_40cm_scaffold_2944_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15910..17829
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IA34_METNO
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
Displaying 18 items

View Taxonomy