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13_1_40cm_scaffold_336

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_336_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..795)
DNA (795bp) protein (265aa)
metallo-beta-lactamase superfamily hydrolase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease J 1 (RNase J1) id=2399877 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase domain-containing protein
13_1_40cm_scaffold_336_2
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(872..1453)
DNA (582bp) protein (194aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA47_SPHTD
uracil-DNA glycosylase superfamily
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ACZ40690.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobact
13_1_40cm_scaffold_336_3
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1466..1918)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3M1_POLGS
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
hypothetical protein
13_1_40cm_scaffold_336_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1915..2715)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRI5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57556.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
hypothetical protein
13_1_40cm_scaffold_336_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2803..4038)
DNA (1236bp) protein (412aa)
putative peptidase M23 family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidase M23B id=2399879 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase M23
13_1_40cm_scaffold_336_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4068..4853)
DNA (786bp) protein (262aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A id=2399881 bin=GWA2_Methylomirabilis_73_35 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4924..5400
DNA (477bp) protein (159aa)
putative universal stress protein id=14626012 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative universal stress protein Tax=CSP1_6_Rokubacteria
UspA domain-containing protein
13_1_40cm_scaffold_336_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5403..6038)
DNA (636bp) protein (212aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWA2_Rokubacteria_73_35_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=2399883 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_9
unknown

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6088..7074
DNA (987bp) protein (329aa)

This feature has no annotations

13_1_40cm_scaffold_336_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7043..9481)
DNA (2439bp) protein (813aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA polymerase I (EC:2.7.7.7)
DNA polymerase id=2399886 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9537..12344)
DNA (2808bp) protein (936aa)
glutamate-ammonia ligase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamate-ammonia-ligase adenylyltransferase ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase id=4811699 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_336_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12494..12832)
DNA (339bp) protein (113aa)
glnB; nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nitrogen regulatory protein P-II id=4756404 bin=GWA2_Methylomirabilis_73_35 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnB; nitrogen regulatory protein P-II
13_1_40cm_scaffold_336_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13064..14671)
DNA (1608bp) protein (536aa)
Na/Pi-cotransporter II-like protein; K03324 phosphate:Na+ symporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Na/Pi-cotransporter II-related protein id=4082207 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Na/Pi-cotransporter II-like protein
13_1_40cm_scaffold_336_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14668..15312)
DNA (645bp) protein (215aa)
gpmB; phosphoglycerate mutase GpmB (EC:5.4.2.1)
phosphoglycerate mutase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fructose-2,6-bisphosphatase id=4756401 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15374..16798)
DNA (1425bp) protein (475aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase id=4756400 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16826..17902)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEF1_THEPS
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_scaffold_336_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17913..18806)
DNA (894bp) protein (298aa)
Putative conserved membrane protein id=4756383 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-hydroxybenzoate polyprenyltransferase Tax=GWA2_Rokubacteria_73_35_curated
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_scaffold_336_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18814..20139)
DNA (1326bp) protein (442aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
nucleotide sugar dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Nucleotide-sugar dehydrogenase id=3240662 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_336_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20136..21233)
DNA (1098bp) protein (366aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamine--scyllo-inositol transaminase id=4082184 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_40cm_scaffold_336_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21230..23416)
DNA (2187bp) protein (729aa)
organic solvent tolerance protein; K04744 LPS-assembly protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance protein
13_1_40cm_scaffold_336_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23432..24730)
DNA (1299bp) protein (433aa)
FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FolC bifunctional protein id=4811710 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
FolC bifunctional protein
13_1_40cm_scaffold_336_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24727..25584)
DNA (858bp) protein (286aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] id=14627079 bin=bin7_NC10_sister species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
accD; acetyl-CoA carboxylase carboxyltransferase subunit beta Tax=GWA2_Rokubacteria_73_35_curated
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta
13_1_40cm_scaffold_336_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25588..26394)
DNA (807bp) protein (269aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain id=4082180 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_336_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26391..27323)
DNA (933bp) protein (311aa)
trpB; tryptophan synthase subunit beta (EC:4.2.1.20) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain id=4059712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 24 items

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