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13_1_40cm_scaffold_4333

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4333_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2..343)
DNA (342bp) protein (114aa)
cynS; cyanate hydratase (EC:4.2.1.104); K01725 cyanate lyase [EC:4.2.1.104] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cynS; cyanate hydratase (EC:4.2.1.104)
Cyanate hydratase id=1754881 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
13_1_40cm_scaffold_4333_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(366..1193)
DNA (828bp) protein (276aa)
Nitrate ABC transporter, ATPase subunits C and D n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXA5_9BACT
nitrate transport ATP-binding subunits C and D Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nitrate ABC transporter ATPase
13_1_40cm_scaffold_4333_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1196..1975)
DNA (780bp) protein (260aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component id=2315225 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
13_1_40cm_scaffold_4333_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1978..3243)
DNA (1266bp) protein (422aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=2315226 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
13_1_40cm_scaffold_4333_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3456..3674)
DNA (219bp) protein (73aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_4333_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3671..4273)
DNA (603bp) protein (201aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Precorrin-2 dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP25_KORVE
precorrin-2 dehydrogenase
13_1_40cm_scaffold_4333_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4275..5054)
DNA (780bp) protein (260aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase id=4453410 bin=GWA2_Methylomirabilis_73_35 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrin-III C-methyltransferase
13_1_40cm_scaffold_4333_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5051..6301)
DNA (1251bp) protein (417aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1); K00366 ferredoxin-nitrite reductase [EC:1.7.7.1] Tax=GWA2_Rokubacteria_73_35_curated
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin-nitrite reductase id=4453411 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_4333_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6503..8632)
DNA (2130bp) protein (710aa)
assimilatory nitrate reductase (EC:1.7.7.2)
Molybdopterin oxidoreductase id=4453412 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_4333_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8625..9395)
DNA (771bp) protein (257aa)
Nitrate ABC transporter, ATPase subunits C and D id=4453413 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate ABC transporter ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
nrtD; nitrate/nitrite ABC transporter ATP-binding protein
13_1_40cm_scaffold_4333_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9407..10213)
DNA (807bp) protein (269aa)
ATPase components of various ABC-type transport systems; K15578 nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-] Tax=GWA2_Rokubacteria_73_35_curated
ATPase components of various ABC-type transport systems id=4453414 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nasD; Nitrate transporter ATPase
13_1_40cm_scaffold_4333_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10213..10983)
DNA (771bp) protein (257aa)
Nitrate/nitrite ABC transporter membrane protein id=4453415 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
nrtB; nitrate/nitrite ABC transporter membrane protein
13_1_40cm_scaffold_4333_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10994..12232)
DNA (1239bp) protein (413aa)
Nitrate/nitrite ABC transporter substrate-binding protein id=4453416 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/nitrite ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
nitrate/nitrite ABC transporter substrate-binding protein
13_1_40cm_scaffold_4333_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12615..12947)
DNA (333bp) protein (111aa)
Uncharacterized protein id=4040228 bin=GWA2_Methylomirabilis_73_35 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative thiol-disulfide oxidoreductase DCC Tax=GWA2_Rokubacteria_73_35_curated
putative thiol-disulfide oxidoreductase DCC
Displaying 14 items

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